| Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011 | 734 | 2011 |
| RNA pseudoknot prediction in energy-based models RB Lyngsø, CNS Pedersen Journal of computational biology 7 (3-4), 409-427, 2000 | 427 | 2000 |
| Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% JH Havgaard, RB Lyngsø, GD Stormo, J Gorodkin Bioinformatics 21 (9), 1815-1824, 2005 | 197 | 2005 |
| Pseudoknots in RNA secondary structures RB Lyngsø, CNS Pedersen Proceedings of the fourth annual international conference on Computational …, 2000 | 123 | 2000 |
| StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees Á Novák, I Miklós, R Lyngsø, J Hein Bioinformatics 24 (20), 2403-2404, 2008 | 116 | 2008 |
| Metrics and similarity measures for hidden Markov models RB Lyngso, CN Pedersen, H Nielsen Proc Int Conf Intell Syst Mol Biol, 178-186, 1999 | 108 | 1999 |
| The foldalign web server for pairwise structural RNA alignment and mutual motif search JH Havgaard, RB Lyngsø, J Gorodkin Nucleic acids research 33 (suppl_2), W650-W653, 2005 | 105 | 2005 |
| Minimum recombination histories by branch and bound RB Lyngsø, YS Song, J Hein International Workshop on Algorithms in Bioinformatics, 239-250, 2005 | 96 | 2005 |
| Finding maximal pairs with bounded gap GS Brodal, RB Lyngsø, CNS Pedersen, J Stoye Combinatorial Pattern Matching: 10th Annual Symposium, CPM 99 Warwick …, 1999 | 94 | 1999 |
| Frnakenstein: multiple target inverse RNA folding RB Lyngsø, JWJ Anderson, E Sizikova, A Badugu, T Hyland, J Hein BMC bioinformatics 13, 1-12, 2012 | 80 | 2012 |
| The consensus string problem and the complexity of comparing hidden Markov models RB Lyngsø, CNS Pedersen Journal of Computer and System Sciences 65 (3), 545-569, 2002 | 73 | 2002 |
| Complexity of pseudoknot prediction in simple models RB Lyngsø International Colloquium on Automata, Languages, and Programming, 919-931, 2004 | 65 | 2004 |
| Internal loops in RNA secondary structure prediction RB Lyngsø, M Zuker, CNS Pedersen Proceedings of the third annual international conference on Computational …, 1999 | 64 | 1999 |
| Evolving stochastic context-free grammars for RNA secondary structure prediction J WJ Anderson, P Tataru, J Staines, J Hein, R Lyngsø BMC bioinformatics 13, 1-10, 2012 | 46 | 2012 |
| Solving the String Statistics Problem in Time (n log n) GS Brodal, RB Lyngsø, A Östlin, CNS Pedersen International Colloquium on Automata, Languages, and Programming, 728-739, 2002 | 33 | 2002 |
| BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC R Satija, A Novak, I Miklós, R Lyngsø, J Hein BMC Evolutionary Biology 9, 1-14, 2009 | 32 | 2009 |
| Stochastic models of sequence evolution including insertion—deletion events I Miklós, Á Novák, R Satija, R Lyngsø, J Hein Statistical methods in medical research 18 (5), 453-485, 2009 | 27 | 2009 |
| Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs JL Herman, Á Novák, R Lyngsø, A Szabó, I Miklós, J Hein BMC bioinformatics 16, 1-26, 2015 | 26 | 2015 |
| Complexity of comparing hidden Markov models RB Lyngsø, CNS Pedersen International Symposium on Algorithms and Computation, 416-428, 2001 | 26 | 2001 |
| Protein folding in the 2D HP model RB Lyngsø, CNS Pedersen BRICS Report Series 6 (16), 1999 | 26 | 1999 |
