| A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014 | 1172 | 2014 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 295 | 2018 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic acids research 41 (D1), D195-D202, 2013 | 231 | 2013 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 184 | 2016 |
| EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, 2015 | 133 | 2015 |
| From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites I Kulakovskiy, V Levitsky, D Oshchepkov, L Bryzgalov, I Vorontsov, ... Journal of bioinformatics and computational biology 11 (01), 1340004, 2013 | 60 | 2013 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 1-11, 2013 | 51 | 2013 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 26 | 2020 |
| PERFECTOS-APE IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev Proceedings of the International Joint Conference on Biomedical Engineering …, 2015 | 26 | 2015 |
| Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells AM Schwartz, LV Putlyaeva, M Covich, AV Klepikova, KA Akulich, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016 | 22 | 2016 |
| Multiple single nucleotide polymorphisms in the first intron of the IL2RA gene affect transcription factor binding and enhancer activity AM Schwartz, DE Demin, IE Vorontsov, AS Kasyanov, LV Putlyaeva, ... Gene 602, 50-56, 2017 | 17 | 2017 |
| Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data IE Vorontsov, AD Fedorova, IS Yevshin, RN Sharipov, FA Kolpakov, ... BMC research notes 11 (1), 1-3, 2018 | 14 | 2018 |
| Negative selection maintains transcription factor binding motifs in human cancer IE Vorontsov, G Khimulya, EN Lukianova, DD Nikolaeva, IA Eliseeva, ... BMC genomics 17 (2), 263-276, 2016 | 14 | 2016 |
| Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ... Genome biology 21, 1-18, 2020 | 12 | 2020 |
| In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response I Eliseeva, I Vorontsov, K Babeyev, S Buyanova, M Sysoeva, ... Translation 1 (2), 18-24, 2013 | 11 | 2013 |
| The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region MA Afanasyeva, LV Putlyaeva, DE Demin, IV Kulakovskiy, IE Vorontsov, ... PLoS One 12 (2), e0172681, 2017 | 8 | 2017 |
| Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... bioRxiv, 2020 | 1 | 2020 |
| Enhanced C/EBPs binding to C> T mismatches facilitates fixation of CpG mutations AS Ershova, IA Eliseeva, OS Nikonov, AD Fedorova, IE Vorontsov, ... BioRxiv, 2020 | 1 | 2020 |
| What do neighbors tell about you: The local context of cis-regulatory modules complicates prediction of regulatory variants DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ... Frontiers in genetics 10, 1078, 2019 | 1 | 2019 |
| Preselection of training cell types improves prediction of transcription factor binding sites A Lando, IE Vorontsov, V Boeva, GV Sapunov, IA Eliseeva, VJ Makeev, ... 2016, 2016 | 1 | 2016 |
Ivan KulakovskiyInstitute of Protein Research RASVerified email at vigg.ru
