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Ilya Vorontsov
Ilya Vorontsov
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Cited by
Year
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
13672014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
4412018
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic acids research 41 (D1), D195-D202, 2013
2512013
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2102016
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, 2015
1742015
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
752020
From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites
I Kulakovskiy, V Levitsky, D Oshchepkov, L Bryzgalov, I Vorontsov, ...
Journal of bioinformatics and computational biology 11 (01), 1340004, 2013
712013
Jaccard index based similarity measure to compare transcription factor binding site models
IE Vorontsov, IV Kulakovskiy, VJ Makeev
Algorithms for Molecular Biology 8 (1), 1-11, 2013
662013
PERFECTOS-APE
IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev
Proceedings of the International Joint Conference on Biomedical Engineering…, 2015
282015
Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells
AM Schwartz, LV Putlyaeva, M Covich, AV Klepikova, KA Akulich, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10…, 2016
262016
Multiple single nucleotide polymorphisms in the first intron of the IL2RA gene affect transcription factor binding and enhancer activity
AM Schwartz, DE Demin, IE Vorontsov, AS Kasyanov, LV Putlyaeva, ...
Gene 602, 50-56, 2017
252017
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ...
Genome biology 21 (1), 1-18, 2020
232020
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data
IE Vorontsov, AD Fedorova, IS Yevshin, RN Sharipov, FA Kolpakov, ...
BMC research notes 11 (1), 1-3, 2018
192018
Negative selection maintains transcription factor binding motifs in human cancer
IE Vorontsov, G Khimulya, EN Lukianova, DD Nikolaeva, IA Eliseeva, ...
BMC genomics 17 (2), 263-276, 2016
162016
Landscape of allele-specific transcription factor binding in the human genome
S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ...
Nature communications 12 (1), 1-15, 2021
142021
In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response
I Eliseeva, I Vorontsov, K Babeyev, S Buyanova, M Sysoeva, ...
Translation 1 (2), 18-24, 2013
132013
The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region
MA Afanasyeva, LV Putlyaeva, DE Demin, IV Kulakovskiy, IE Vorontsov, ...
PLoS One 12 (2), e0172681, 2017
102017
Enhanced C/EBPs binding to C> T mismatches facilitates fixation of CpG mutations
AS Ershova, IA Eliseeva, OS Nikonov, AD Fedorova, IE Vorontsov, ...
BioRxiv, 2020
22020
What do neighbors tell about you: the local context of cis-regulatory modules complicates prediction of regulatory variants
DD Penzar, AO Zinkevich, IE Vorontsov, VV Sitnik, AV Favorov, ...
Frontiers in genetics, 1078, 2019
22019
Enhanced C/EBP binding to G T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells
AS Ershova, IA Eliseeva, OS Nikonov, AD Fedorova, IE Vorontsov, ...
Cell reports 35 (10), 109221, 2021
12021
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