| The histone deacetylase inhibitor valproic acid selectively induces proteasomal degradation of HDAC2 OH Krämer, P Zhu, HP Ostendorff, M Golebiewski, J Tiefenbach, ... The EMBO journal, 2003 | 646 | 2003 |
| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 341 | 2011 |
| SABIO-RK—database for biochemical reaction kinetics U Wittig, R Kania, M Golebiewski, M Rey, L Shi, L Jong, E Algaa, ... Nucleic acids research 40 (D1), D790-D796, 2012 | 321 | 2012 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 228 | 2020 |
| Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7, 1-19, 2013 | 188 | 2013 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014 | 161 | 2014 |
| SEEK: a systems biology data and model management platform K Wolstencroft, S Owen, O Krebs, Q Nguyen, NJ Stanford, M Golebiewski, ... BMC systems biology 9, 1-12, 2015 | 135 | 2015 |
| FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017 | 125 | 2017 |
| Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015 | 92 | 2015 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 87 | 2021 |
| SABIO-RK: integration and curation of reaction kinetics data U Wittig, M Golebiewski, R Kania, O Krebs, S Mir, A Weidemann, ... International Workshop on Data Integration in the Life Sciences, 94-103, 2006 | 85 | 2006 |
| Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019 | 72 | 2019 |
| Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation CB Collin, T Gebhardt, M Golebiewski, T Karaderi, M Hillemanns, ... Journal of personalized medicine 12 (2), 166, 2022 | 62 | 2022 |
| Storing and annotating of kinetic data I Rojas, M Golebiewski, R Kania, O Krebs, S Mir, A Weidemann, U Wittig In silico biology 7 (2 Supplement), 37-44, 2007 | 51 | 2007 |
| The AIMe registry for artificial intelligence in biomedical research J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ... Nature methods 18 (10), 1128-1131, 2021 | 49 | 2021 |
| The evolution of standards and data management practices in systems biology NJ Stanford, K Wolstencroft, M Golebiewski, R Kania, N Juty, C Tomlinson, ... Molecular systems biology 11 (12), 851, 2015 | 43 | 2015 |
| Specifications of standards in systems and synthetic biology: status and developments in 2020 F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ... Journal of integrative bioinformatics 17 (2-3), 20200022, 2020 | 40 | 2020 |
| The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE) D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ... Journal of integrative bioinformatics 17 (2-3), 20200005, 2020 | 34 | 2020 |
| SBML2LaTEX: Conversion of SBML files into human-readable reports A Dräger, H Planatscher, D Motsou Wouamba, A Schröder, M Hucka, ... Bioinformatics 25 (11), 1455-1456, 2009 | 34 | 2009 |
| The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable D Nickerson, K Atalag, B De Bono, J Geiger, C Goble, S Hollmann, ... Interface Focus 6 (2), 20150103, 2016 | 32 | 2016 |
