Jüri Reimand

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Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Meelis KullAssociate Professor, University of TartuVerified email at ut.ee
Mona MeyerHospital for Sick Children, Toronto, CanadaVerified email at sickkids.ca
Nuria Lopez-BigasICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
Abel Gonzalez-PerezInstitut de Recerca Biomedica BarcelonaVerified email at irbbarcelona.org
Paul C. BoutrosUniversity of California, Los AngelesVerified email at mednet.ucla.edu
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Peter DirksProfessor of SurgeryVerified email at sickkids.ca
Omar WagihDeep GenomicsVerified email at deepgenomics.com
David TamboreroVerified email at upf.edu
Raivo KoldeSenior Research Fellow, University of TartuVerified email at ut.ee
Liis Uusküla-ReimandSickKids Research InstituteVerified email at sickkids.ca
Francis OuelletteOrigin BioinformaticsVerified email at bioinformatics.ca
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Cyriac KandothUniversity of California Los AngelesVerified email at mednet.ucla.edu
Michael D. WilsonUniversity of Toronto and SickKids Research InstituteVerified email at sickkids.ca
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu

Jüri Reimand

Ontario Institute for Cancer Research, University of Toronto

Verified email at utoronto.ca

computational biology cancer genomics pathway analysis gene regulation cell signaling


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g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016	896	2016
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl_2), W193-W200, 2007	831	2007
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ... Nature 488 (7409), 49-56, 2012	701	2012
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer Cell 27 (5), 728-743, 2015	618	2015
Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition M Kool, DTW Jones, N Jäger, PA Northcott, TJ Pugh, V Hovestadt, ... Cancer cell 25 (3), 393-405, 2014	537	2014
g: Profiler—a web server for functional interpretation of gene lists (2011 update) J Reimand, T Arak, J Vilo Nucleic acids research 39 (suppl 2), W307-W315, 2011	511	2011
Intertumoral Heterogeneity within Medulloblastoma Subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer Cell 31 (6), 737-754. e6, 2017	486	2017
New brain tumor entities emerge from molecular classification of CNS-PNETs D Sturm, BA Orr, UH Toprak, V Hovestadt, DTW Jones, D Capper, M Sill, ... Cell 164 (5), 1060-1072, 2016	461	2016
Comprehensive identification of mutational cancer driver genes across 12 tumor types D Tamborero, A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, ... Scientific reports 3 (1), 1-10, 2013	434	2013
Pan-cancer analysis of whole genomes TITPCAWG Consortium Nature 578 (7793), 82–93, 2020	371*	2020
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature Protocols, 1, 2019	332	2019
Pathogenic germline variants in 10,389 adult cancers K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ... Cell 173 (2), 355-370. e14, 2018	297	2018
Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015	282	2015
Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity M Meyer, J Reimand, X Lan, R Head, X Zhu, M Kushida, J Bayani, ... Proceedings of the National Academy of Sciences 112 (3), 851-856, 2015	272	2015
Functional genomic landscape of human breast cancer drivers, vulnerabilities, and resistance R Marcotte, A Sayad, KR Brown, F Sanchez-Garcia, J Reimand, M Haider, ... Cell 164 (1), 293-309, 2016	271	2016
Divergent clonal selection dominates medulloblastoma at recurrence. AS Morrissy, L Garzia, DJ Shih, S Zuyderduyn, X Huang, P Skowron, ... Nature 529, 351-7, 2016	245	2016
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers J Reimand, GD Bader Molecular systems biology 9 (1), 637, 2013	224	2013
Computational approaches to identify functional genetic variants in cancer genomes A Gonzalez-Perez, V Mustonen, B Reva, GRS Ritchie, P Creixell, ... Nature methods 10 (8), 723, 2013	162	2013
The mutational landscape of phosphorylation signaling in cancer J Reimand, O Wagih, GD Bader Scientific reports 3 (1), 1-9, 2013	161	2013
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo Genome biology 10 (12), 1-11, 2009	154	2009

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