Jüri Reimand

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Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Meelis KullAssociate Professor, University of TartuVerified email at ut.ee
Mona MeyerHospital for Sick Children, Toronto, CanadaVerified email at sickkids.ca
Nuria Lopez-BigasICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
Abel Gonzalez-PerezInstitut de Recerca Biomedica BarcelonaVerified email at irbbarcelona.org
Paul C. BoutrosUniversity of California, Los AngelesVerified email at mednet.ucla.edu
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Peter DirksProfessor of SurgeryVerified email at sickkids.ca
Omar WagihDeep GenomicsVerified email at deepgenomics.com
David TamboreroVerified email at upf.edu
Liis Uusküla-ReimandSickKids Research InstituteVerified email at sickkids.ca
Raivo KoldeSenior Research Fellow, University of TartuVerified email at ut.ee
Francis OuelletteOrigin BioinformaticsVerified email at bioinformatics.ca
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Cyriac KandothUniversity of California Los AngelesVerified email at mednet.ucla.edu
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Michael D. WilsonUniversity of Toronto and SickKids Research InstituteVerified email at sickkids.ca
Scherer, Stephen W.The Hospital for Sick Children, Genetics and Genome Biology Program, University of TorontoVerified email at sickkids.ca
Melanie WoodinUniversity of TorontoVerified email at utoronto.ca

Jüri Reimand

Ontario Institute for Cancer Research, University of Toronto

Verified email at utoronto.ca

computational biology cancer genomics pathway analysis gene regulation cell signaling


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g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016	947	2016
g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl_2), W193-W200, 2007	877	2007
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ... Nature 488 (7409), 49-56, 2012	728	2012
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer Cell 27 (5), 728-743, 2015	664	2015
Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition M Kool, DTW Jones, N Jäger, PA Northcott, TJ Pugh, V Hovestadt, ... Cancer cell 25 (3), 393-405, 2014	569	2014
Intertumoral Heterogeneity within Medulloblastoma Subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer Cell 31 (6), 737-754. e6, 2017	546	2017
g: Profiler—a web server for functional interpretation of gene lists (2011 update) J Reimand, T Arak, J Vilo Nucleic acids research 39 (suppl 2), W307-W315, 2011	521	2011
New brain tumor entities emerge from molecular classification of CNS-PNETs D Sturm, BA Orr, UH Toprak, V Hovestadt, DTW Jones, D Capper, M Sill, ... Cell 164 (5), 1060-1072, 2016	492	2016
Pan-cancer analysis of whole genomes TITPCAWG Consortium Nature 578 (7793), 82–93, 2020	481*	2020
Comprehensive identification of mutational cancer driver genes across 12 tumor types D Tamborero, A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, ... Scientific reports 3 (1), 1-10, 2013	440	2013
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ... Nature Protocols, 1, 2019	428	2019
Pathogenic germline variants in 10,389 adult cancers K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ... Cell 173 (2), 355-370. e14, 2018	340	2018
Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity M Meyer, J Reimand, X Lan, R Head, X Zhu, M Kushida, J Bayani, ... Proceedings of the National Academy of Sciences 112 (3), 851-856, 2015	292	2015
Functional genomic landscape of human breast cancer drivers, vulnerabilities, and resistance R Marcotte, A Sayad, KR Brown, F Sanchez-Garcia, J Reimand, M Haider, ... Cell 164 (1), 293-309, 2016	287	2016
Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015	273	2015
Divergent clonal selection dominates medulloblastoma at recurrence. AS Morrissy, L Garzia, DJ Shih, S Zuyderduyn, X Huang, P Skowron, ... Nature 529, 351-7, 2016	263	2016
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers J Reimand, GD Bader Molecular systems biology 9 (1), 637, 2013	229	2013
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	198	2020
The mutational landscape of phosphorylation signaling in cancer J Reimand, O Wagih, GD Bader Scientific reports 3 (1), 1-9, 2013	164	2013
Computational approaches to identify functional genetic variants in cancer genomes A Gonzalez-Perez, V Mustonen, B Reva, GRS Ritchie, P Creixell, ... Nature methods 10 (8), 723, 2013	163	2013

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