Yulia A Medvedeva
Yulia A Medvedeva
Research Center of Biotechnology RAS
Verified email at biengi.ac.ru
Title
Cited by
Cited by
Year
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
12432014
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
6682017
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
3492018
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
3022017
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic acids research 41 (D1), D195-D202, 2013
2422013
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15 (1), 1-12, 2014
2172014
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2002016
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, 2015
1432015
Exploring massive, genome scale datasets with the GenometriCorr package
A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ...
PLoS computational biology 8 (5), e1002529, 2012
1402012
Intergenic, gene terminal, and intragenic CpG islands in the human genome
YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ...
BMC genomics 11 (1), 1-16, 2010
922010
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ...
Nucleic acids research, gkw995, 2016
802016
Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes
T Alam, YA Medvedeva, H Jia, JB Brown, L Lipovich, VB Bajic
PloS one 9 (10), e109443, 2014
762014
Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to marine and freshwater conditions
AV Artemov, NS Mugue, SM Rastorguev, S Zhenilo, AM Mazur, ...
Molecular biology and evolution 34 (9), 2203-2213, 2017
702017
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
482020
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ...
Nature communications 11 (1), 1-14, 2020
402020
Insights into the transcriptional architecture of behavioral plasticity in the honey bee Apis mellifera
AM Khamis, AR Hamilton, YA Medvedeva, T Alam, I Alam, M Essack, ...
Scientific reports 5 (1), 1-19, 2015
362015
Regional differences in gene expression and promoter usage in aged human brains
LM Pardo, P Rizzu, M Francescatto, M Vitezic, GGR Leday, JS Sanchez, ...
Neurobiology of aging 34 (7), 1825-1836, 2013
302013
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools
IV Antonov, E Mazurov, M Borodovsky, YA Medvedeva
Briefings in bioinformatics 20 (2), 551-564, 2019
272019
CpG traffic lights are markers of regulatory regions in human genome
AV Lioznova, AM Khamis, AV Artemov, E Besedina, V Ramensky, ...
BMC genomics 20 (1), 1-12, 2019
242019
Heavy–light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation
YA Lomakin, MY Zakharova, AV Stepanov, MA Dronina, IV Smirnov, ...
Molecular immunology 62 (2), 305-314, 2014
242014
The system can't perform the operation now. Try again later.
Articles 1–20