Yulia A Medvedeva
Yulia A Medvedeva
Research Center of Biotechnology RAS
Verified email at biengi.ac.ru
Title
Cited by
Cited by
Year
A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
8462014
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
4672017
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...
Nucleic acids research 41 (D1), D195-D202, 2013
2092013
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
1772018
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15 (1), 119, 2014
1762014
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
1722017
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
1532016
Exploring massive, genome scale datasets with the GenometriCorr package
A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ...
PLoS Comput Biol 8 (5), e1002529, 2012
1192012
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, 2015
972015
Intergenic, gene terminal, and intragenic CpG islands in the human genome
YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ...
BMC genomics 11 (1), 48, 2010
832010
Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes
T Alam, YA Medvedeva, H Jia, JB Brown, L Lipovich, VB Bajic
PloS one 9 (10), e109443, 2014
672014
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ...
Nucleic acids research, gkw995, 2016
642016
Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to marine and freshwater conditions
AV Artemov, NS Mugue, SM Rastorguev, S Zhenilo, AM Mazur, ...
Molecular biology and evolution 34 (9), 2203-2213, 2017
402017
Insights into the transcriptional architecture of behavioral plasticity in the honey bee Apis mellifera
AM Khamis, AR Hamilton, YA Medvedeva, T Alam, I Alam, M Essack, ...
Scientific reports 5 (1), 1-19, 2015
342015
Regional differences in gene expression and promoter usage in aged human brains
LM Pardo, P Rizzu, M Francescatto, M Vitezic, GGR Leday, JS Sanchez, ...
Neurobiology of aging 34 (7), 1825-1836, 2013
262013
Heavy–light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation
YA Lomakin, MY Zakharova, AV Stepanov, MA Dronina, IV Smirnov, ...
Molecular immunology 62 (2), 305-314, 2014
222014
Preservation of methylated CpG dinucleotides in human CpG islands
AY Panchin, VJ Makeev, YA Medvedeva
Biology direct 11 (1), 1-15, 2016
132016
Mutations and binding sites of human transcription factors
FK Kamanu, YA Medvedeva, U Schaefer, BR Jankovic, JAC Archer, ...
Frontiers in genetics 3, 100, 2012
132012
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools
IV Antonov, E Mazurov, M Borodovsky, YA Medvedeva
Briefings in bioinformatics 20 (2), 551-564, 2019
122019
Perinatal exposure to low dose 2, 2′, 4, 4′-tetrabromodiphenyl ether (BDE-47) alters sperm DNA methylation in adult rats
A Suvorov, A Shershebnev, H Wu, Y Medvedeva, O Sergeyev, JR Pilsner
Reproductive Toxicology 75, 136-143, 2018
122018
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