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Tie Koide
Tie Koide
Bestätigte E-Mail-Adresse bei fmrp.usp.br
Titel
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Zitiert von
Jahr
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
1502009
DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence
T Koide, PA Zaini, LM Moreira, RZN Vêncio, AY Matsukuma, AM Durham, ...
Journal of bacteriology 186 (16), 5442-5449, 2004
982004
BayGO: Bayesian analysis of ontology term enrichment in microarray data
RZN Vêncio, T Koide, SL Gomes, CA de B Pereira
BMC bioinformatics 7 (1), 1-11, 2006
722006
The role of predictive modelling in rationally re-engineering biological systems
T Koide, W Lee Pang, NS Baliga
Nature Reviews Microbiology 7 (4), 297-305, 2009
702009
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability
AK Schmid, DJ Reiss, M Pan, T Koide, NS Baliga
Molecular systems biology 5 (1), 282, 2009
652009
HTself: self–self based statistical test for low replication microarray studies
RZN Vêncio, T Koide
DNA Research 12 (3), 211-214, 2005
632005
Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa
T Koide, RZN Vêncio, SL Gomes
Journal of bacteriology 188 (16), 5821-5830, 2006
562006
Integration and visualization of systems biology data in context of the genome
JC Bare, T Koide, DJ Reiss, D Tenenbaum, NS Baliga
BMC bioinformatics 11 (1), 1-8, 2010
482010
Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage
PT Van, AK Schmid, NL King, A Kaur, M Pan, K Whitehead, T Koide, ...
Journal of proteome research 7 (9), 3755-3764, 2008
472008
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis
MT Facciotti, WL Pang, F Lo, K Whitehead, T Koide, K Masumura, M Pan, ...
BMC systems biology 4 (1), 1-19, 2010
372010
The Single Extracytoplasmic-Function Sigma Factor of Xylella fastidiosa Is Involved in the Heat Shock Response and Presents an Unusual Regulatory Mechanism
JF da Silva Neto, T Koide, SL Gomes, MV Marques
Journal of bacteriology 189 (2), 551-560, 2007
372007
Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease
FR Teixeira, SJ Randle, SP Patel, TET Mevissen, G Zenkeviciute, T Koide, ...
Biochemical Journal 473 (20), 3563-3580, 2016
352016
Role of σ54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa
JF da Silva Neto, T Koide, CM Abe, SL Gomes, MV Marques
Archives of microbiology 189 (3), 249-261, 2008
302008
Site-directed gene disruption in Xylella fastidiosa
JF da Silva Neto, T Koide, SL Gomes, MV Marques
FEMS microbiology letters 210 (1), 105-110, 2002
272002
Sense overlapping transcripts in IS 1341-type transposase genes are functional non-coding RNAs in archaea
JV Gomes-Filho, LS Zaramela, VCS Italiani, NS Baliga, RZN Vêncio, ...
RNA biology 12 (5), 490-500, 2015
262015
Iron Deficiency Generates Oxidative Stress and Activation of the SOS Response in Caulobacter crescentus
L Leaden, LG Silva, RA Ribeiro, NM Dos Santos, APR Lorenzetti, ...
Frontiers in microbiology 9, 2014, 2018
242018
SpotWhatR: a user-friendly microarray data analysis system
T Koide, SMSI Furlaneto, SL Gomes, RZN Vêncio
Brasil, 2006
242006
Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life
LS Zaramela, RZN Vencio, F Ten-Caten, NS Baliga, T Koide
PloS one 9 (9), e107680, 2014
232014
Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the σ54 regulon
JF da Silva Neto, T Koide, SL Gomes, MV Marques
BMC microbiology 10 (1), 1-12, 2010
172010
Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii
SM Salem-Izacc, T Koide, RZN Vêncio, SL Gomes
Eukaryotic cell 8 (2), 170-180, 2009
152009
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