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Zijian Zhang
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Machine learning reveals the critical interactions for SARS-CoV-2 spike protein binding to ACE2
A Pavlova, Z Zhang, A Acharya, DL Lynch, YT Pang, Z Mou, JM Parks, ...
The journal of physical chemistry letters 12 (23), 5494-5502, 2021
482021
Plasticity within the barrel domain of BamA mediates a hybrid-barrel mechanism by BAM
R Wu, JW Bakelar, K Lundquist, Z Zhang, KM Kuo, D Ryoo, YT Pang, ...
Nature Communications 12 (1), 7131, 2021
322021
Bifunctional janus particles as multivalent synthetic nanoparticle antibodies (SNAbs) for selective depletion of target cells
J Liu, R Toy, C Vantucci, P Pradhan, Z Zhang, KM Kuo, KP Kubelick, ...
Nano letters 21 (1), 875-886, 2021
272021
Structural insight into toxin secretion by contact-dependent growth inhibition transporters
J Guerin, I Botos, Z Zhang, K Lundquist, JC Gumbart, SK Buchanan
Elife 9, e58100, 2020
162020
Inward-facing glycine residues create sharp turns in β-barrel membrane proteins
Z Zhang, D Ryoo, C Balusek, A Acharya, MO Rydmark, D Linke, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1863 (10), 183662, 2021
52021
Extraction of Dielectric Permittivity from Atomistic Molecular Dynamics Simulations and Microwave Measurements
A Saad-Falcon, Z Zhang, D Ryoo, J Dee, RS Westafer, JC Gumbart
The Journal of Physical Chemistry B 126 (40), 8021-8029, 2022
2022
Comparing the dynamics of the BAM complex between two species
Z Fan, Z Zhang, E Billings, N Noinaj, JC Gumbart
Biophysical Journal 121 (3), 461a, 2022
2022
BamB Stabilizes BamA's Laterally Open and Closed States
D Ryoo, KM Kuo, Z Zhang, YT Pang, JC Gumbart
Biophysical Journal 120 (3), 91a, 2021
2021
Lateral Gate Opening of BAM Complex Studied by Free Energy Calculations and the String Method
YT Pang, D Ryoo, Z Zhang, K Lundquist, JC Gumbart
Biophysical Journal 118 (3), 363a, 2020
2020
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