|Genomically recoded organisms expand biological functions|
MJ Lajoie, AJ Rovner, DB Goodman, HR Aerni, AD Haimovich, ...
science 342 (6156), 357-360, 2013
|Precise manipulation of chromosomes in vivo enables genome-wide codon replacement|
FJ Isaacs, PA Carr, HH Wang, MJ Lajoie, B Sterling, L Kraal, AC Tolonen, ...
Science 333 (6040), 348-353, 2011
|Causes and effects of N-terminal codon bias in bacterial genes|
DB Goodman, GM Church, S Kosuri
Science 342 (6157), 475-479, 2013
|Composability of regulatory sequences controlling transcription and translation in Escherichia coli|
S Kosuri, DB Goodman, G Cambray, VK Mutalik, Y Gao, AP Arkin, D Endy, ...
Proceedings of the National Academy of Sciences 110 (34), 14024-14029, 2013
|Design, synthesis, and testing toward a 57-codon genome.|
N Ostrov, M Landon, M Guell, G Kuznetsov, J Teramoto, N Cervantes, ...
Science 353 (6301), 819–822, 2016
|Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes|
N Gupta, J Benhamida, V Bhargava, D Goodman, E Kain, I Kerman, ...
Genome research 18 (7), 1133-1142, 2008
|Engineering and optimising deaminase fusions for genome editing|
L Yang, AW Briggs, WL Chew, P Mali, M Guell, J Aach, DB Goodman, ...
Nature communications 7 (1), 1-12, 2016
|Emergent rules for codon choice elucidated by editing rare arginine codons in Escherichia coli|
MG Napolitano, M Landon, CJ Gregg, MJ Lajoie, L Govindarajan, ...
Proceedings of the National Academy of Sciences 113 (38), E5588-E5597, 2016
|Rational optimization of tolC as a powerful dual selectable marker for genome engineering|
CJ Gregg, MJ Lajoie, MG Napolitano, JA Mosberg, DB Goodman, J Aach, ...
Nucleic acids research 42 (7), 4779-4790, 2014
|DNAplotlib: programmable visualization of genetic designs and associated data|
BS Der, E Glassey, BA Bartley, C Enghuus, DB Goodman, DB Gordon, ...
ACS synthetic biology 6 (7), 1115-1119, 2017
|A multiplexed assay for exon recognition reveals that an unappreciated fraction of rare genetic variants cause large-effect splicing disruptions|
R Cheung, KD Insigne, D Yao, CP Burghard, J Wang, YHE Hsiao, ...
Molecular cell 73 (1), 183-194. e8, 2019
|Product length, dye choice, and detection chemistry in the bead-emulsion amplification of millions of single DNA molecules in parallel|
I Tiemann-Boege, C Curtis, DN Shinde, DB Goodman, S Tavare, ...
Analytical chemistry 81 (14), 5770-5776, 2009
|Polymer-stabilized Cas9 nanoparticles and modified repair templates increase genome editing efficiency|
DN Nguyen, TL Roth, PJ Li, PA Chen, R Apathy, MR Mamedov, LT Vo, ...
Nature biotechnology 38 (1), 44-49, 2020
|Optimizing complex phenotypes through model-guided multiplex genome engineering|
G Kuznetsov, DB Goodman, GT Filsinger, M Landon, N Rohland, J Aach, ...
Genome biology 18 (1), 100, 2017
|Pooled knockin targeting for genome engineering of cellular immunotherapies|
TL Roth, PJ Li, F Blaeschke, JF Nies, R Apathy, C Mowery, R Yu, ...
|Baculovirus phylogeny based on genome rearrangements|
D Goodman, N Ollikainen, C Sholley
RECOMB International Workshop on Comparative Genomics, 69-82, 2007
|Large-scale screening of rare genetic variants in humans reveals frequent splicing disruptions|
R Cheung, KD Insigne, D Yao, CP Burghard, EM Jones, DB Goodman, ...
bioRxiv, 199927, 2017
|Millstone: software for multiplex microbial genome analysis and engineering|
DB Goodman, G Kuznetsov, MJ Lajoie, BW Ahern, MG Napolitano, ...
Genome biology 18 (1), 1-7, 2017
|Enabling multiplexed testing of pooled donor cells through whole-genome sequencing|
Y Chan, YK Chan, DB Goodman, X Guo, A Chavez, ET Lim, GM Church
Genome medicine 10 (1), 31, 2018
|High throughput functional variant screens via in-vivo production of single-stranded DNA|
MG Schubert, DB Goodman, TM Wannier, D Kaur, F Farzadfard, TK Lu, ...