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Ramunas Stepanauskas
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Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431-437, 2013
23092013
Co-selection of antibiotic and metal resistance
C Baker-Austin, MS Wright, R Stepanauskas, JV McArthur
Trends in microbiology 14 (4), 176-182, 2006
18632006
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
14492017
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11612013
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11612013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Research in Computational Molecular Biology: 17th Annual International …, 2013
7912013
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
BK Swan, M Martinez-Garcia, CM Preston, A Sczyrba, T Woyke, D Lamy, ...
Science 333 (6047), 1296-1300, 2011
5862011
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ...
Science 344 (6182), 416-420, 2014
5772014
Predominant archaea in marine sediments degrade detrital proteins
KG Lloyd, L Schreiber, DG Petersen, KU Kjeldsen, MA Lever, AD Steen, ...
Nature 496 (7444), 215-218, 2013
5442013
Assembling the marine metagenome, one cell at a time
T Woyke, G Xie, A Copeland, JM Gonzalez, C Han, H Kiss, JH Saw, ...
PloS one 4 (4), e5299, 2009
3942009
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
BK Swan, B Tupper, A Sczyrba, FM Lauro, M Martinez-Garcia, ...
Proceedings of the National Academy of Sciences 110 (28), 11463-11468, 2013
3852013
Coselection for microbial resistance to metals and antibiotics in freshwater microcosms
R Stepanauskas, TC Glenn, CH Jagoe, RC Tuckfield, AH Lindell, CJ King, ...
Environmental microbiology 8 (9), 1510-1514, 2006
3542006
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
R Stepanauskas, ME Sieracki
Proceedings of the National Academy of Sciences 104 (21), 9052-9057, 2007
3232007
Single-cell genomics reveals organismal interactions in uncultivated marine protists
HS Yoon, DC Price, R Stepanauskas, VD Rajah, ME Sieracki, WH Wilson, ...
Science 332 (6030), 714-717, 2011
3182011
New abundant microbial groups in aquatic hypersaline environments
R Ghai, L Pašić, AB Fernández, AB Martin-Cuadrado, CM Mizuno, ...
Scientific reports 1 (1), 135, 2011
3092011
Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ...
Nature protocols 9 (5), 1038-1048, 2014
2942014
Single cell genomics: an individual look at microbes
R Stepanauskas
Current opinion in microbiology 15 (5), 613-620, 2012
2842012
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia
M Martinez-Garcia, DM Brazel, BK Swan, C Arnosti, PSG Chain, ...
PloS one 7 (4), e35314, 2012
2652012
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
MG Pachiadaki, E Sintes, K Bergauer, JM Brown, NR Record, BK Swan, ...
Science 358 (6366), 1046-1051, 2017
2552017
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments
S Dyksma, K Bischof, BM Fuchs, K Hoffmann, D Meier, A Meyerdierks, ...
The ISME journal 10 (8), 1939-1953, 2016
2262016
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