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Matt Simison
Matt Simison
Verified email at stanford.edu
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Cited by
Year
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
34862019
The Gene Ontology resource: enriching a GOld mine
Nucleic acids research 49 (D1), D325-D334, 2021
25062021
Saccharomyces Genome Database: the genomics resource of budding yeast
JM Cherry, EL Hong, C Amundsen, R Balakrishnan, G Binkley, ET Chan, ...
Nucleic acids research 40 (D1), D700-D705, 2012
20642012
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
SR Engel, FS Dietrich, DG Fisk, G Binkley, R Balakrishnan, MC Costanzo, ...
G3: Genes, Genomes, Genetics 4 (3), 389-398, 2014
5082014
The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data
MS Skrzypek, J Binkley, G Binkley, SR Miyasato, M Simison, G Sherlock
Nucleic acids research, gkw924, 2016
3752016
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
GC Cerqueira, MB Arnaud, DO Inglis, MS Skrzypek, G Binkley, M Simison, ...
Nucleic acids research 42 (D1), D705-D710, 2014
3142014
The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and …
DO Inglis, MB Arnaud, J Binkley, P Shah, MS Skrzypek, F Wymore, ...
Nucleic acids research 40 (D1), D667-D674, 2012
2322012
Expansion of the Gene Ontology knowledgebase and resources
S Carbon, H Dietze, SE Lewis, CJ Mungall, MC Munoz-Torres, S Basu, ...
Nucleic acids research 45 (D1), 2017
2112017
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
MB Arnaud, GC Cerqueira, DO Inglis, MS Skrzypek, J Binkley, ...
Nucleic acids research 40 (D1), D653-D659, 2012
1902012
Alliance of Genome Resources Portal: unified model organism research platform
Nucleic acids research 48 (D1), D650-D658, 2020
1372020
Harmonizing model organism data in the Alliance of Genome Resources
Genetics 220 (4), iyac022, 2022
582022
Ontology application and use at the ENCODE DCC
VS Malladi, DT Erickson, NR Podduturi, LD Rowe, ET Chan, JM Davidson, ...
Database 2015, bav010, 2015
482015
The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
J Binkley, MB Arnaud, DO Inglis, MS Skrzypek, P Shah, F Wymore, ...
Nucleic acids research 42 (D1), D711-D716, 2014
412014
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
SR Engel, ED Wong, RS Nash, S Aleksander, M Alexander, E Douglass, ...
Genetics 220 (4), iyab224, 2022
352022
Saccharomyces genome database informs human biology
MS Skrzypek, RS Nash, ED Wong, KA MacPherson, ST Hellerstedt, ...
Nucleic acids research 46 (D1), D736-D742, 2018
322018
The ENCODE uniform analysis pipelines
BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ...
Research Square, 2023
232023
Transcriptome visualization and data availability at the Saccharomyces Genome Database
PC Ng, ED Wong, KA MacPherson, S Aleksander, J Argasinska, B Dunn, ...
Nucleic acids research 48 (D1), D743-D748, 2020
142020
Candida Genome Database
MS Skrzypek, J Binkley, G Binkley, SR Miyasato, M Simison, G Sherlock
Published: Website: http://www. candidagenome. org, 2017
92017
Data navigation on the ENCODE portal
MS Kagda, B Lam, C Litton, C Small, CA Sloan, E Spragins, F Tanaka, ...
arXiv preprint arXiv:2305.00006, 2023
42023
Data navigation on the ENCODE Portal
B Hitz, M Kagda, B Lam, C Litton, C Small, C Sloan, E Spragins, F Tanaka, ...
2023
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