Matthew T. Weirauch

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Xiaoting ChenCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
Leah C KottyanProfessor, Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Nathan SalomonisAssociate Professor Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Artem BarskiCincinnati Childrens HospitalVerified email at cchmc.org
k m kaufmanVerified email at cchmc.org
John B HarleyStaff Physician, US Department of Veterans Affairs Medical Center, CincinnatiVerified email at va.gov
Hong JiUniversity of California DavisVerified email at ucdavis.edu
Samuel A. LambertAssistant Professor, University of CambridgeVerified email at medschl.cam.ac.uk
Brendan FreyFounder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of TorontoVerified email at psi.toronto.edu
Marc E. Rothenberg, MD, PhDProfessor of Pediatrics, Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Joshua M StuartUC Santa Cruz Genomics InstituteVerified email at ucsc.edu
Hamed S. NajafabadiAssociate Professor at McGill UniversityVerified email at mcgill.ca
Jussi TaipaleUniversity of CambridgeVerified email at sanger.ac.uk
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Xiaoming LuCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Emily R MiraldiCincinnati Children's HospitalVerified email at cchmc.org
Daniel T. StarczynowskiCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Nan ShenProfessor of Medicine ,Renji Hospital, Shanghai JiaoTong University School of MedicineVerified email at cchmc.org
Albertha J M WalhoutProfessor and Chair, Department of Systems Biology, UMass Medical SchoolVerified email at umassmed.edu

Matthew T. Weirauch

Other namesMatt Weirauch, Matthew Weirauch

Professor, Cincinnati Children's Hospital

Verified email at cchmc.org

Computational Biology Gene Regulation Functional Genomics Bioinformatics Genomics


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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6107	2007
The human transcription factors SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin, M Albu, X Chen, ... Cell 172 (4), 650-665, 2018	3166	2018
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning B Alipanahi, A Delong, MT Weirauch, BJ Frey Nature biotechnology 33 (8), 831-838, 2015	3158	2015
Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004	2575	2004
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2543	2010
Determination and inference of eukaryotic transcription factor sequence specificity MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ... Cell 158 (6), 1431-1443, 2014	1844	2014
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013	1578	2013
The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006	1513	2006
Genetic associations with gestational duration and spontaneous preterm birth G Zhang, B Feenstra, J Bacelis, X Liu, LM Muglia, J Juodakis, DE Miller, ... New England Journal of Medicine 377 (12), 1156-1167, 2017	451	2017
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ... elife 2, e00675, 2013	423	2013
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	416	2013
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity JB Harley, X Chen, M Pujato, D Miller, A Maddox, C Forney, ... Nature genetics 50 (5), 699-707, 2018	379	2018
C2H2 zinc finger proteins greatly expand the human regulatory lexicon HS Najafabadi, S Mnaimneh, FW Schmitges, M Garton, KN Lam, A Yang, ... Nature biotechnology 33 (5), 555-562, 2015	372	2015
Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease LC Kottyan, BP Davis, JD Sherrill, K Liu, M Rochman, K Kaufman, ... Nature genetics 46 (8), 895-900, 2014	315	2014
MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences S Schwartz, L Elnitski, M Li, M Weirauch, C Riemer, A Smit, NCS Program, ... Nucleic acids research 31 (13), 3518-3524, 2003	276	2003
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ... Cell reports 8 (6), 2015-2030, 2014	273	2014
Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins BRG Gordon, Y Li, A Cote, MT Weirauch, P Ding, TR Hughes, ... Proceedings of the National Academy of Sciences 108 (26), 10690-10695, 2011	266	2011
Amphioxus functional genomics and the origins of vertebrate gene regulation F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic, M Perry, ... Nature 564 (7734), 64-70, 2018	253	2018
Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers MJ Petrany, CO Swoboda, C Sun, K Chetal, X Chen, MT Weirauch, ... Nature communications 11 (1), 6374, 2020	252	2020
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) SD Schoville, YH Chen, MN Andersson, JB Benoit, A Bhandari, ... Scientific reports 8 (1), 1931, 2018	233	2018

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