Smita Krishnaswamy
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viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
ED Amir, KL Davis, MD Tadmor, EF Simonds, JH Levine, SC Bendall, ...
Nature biotechnology 31 (6), 545-552, 2013
Recovering gene interactions from single-cell data using data diffusion
D Van Dijk, R Sharma, J Nainys, K Yim, P Kathail, AJ Carr, C Burdziak, ...
Cell 174 (3), 716-729. e27, 2018
Normalization of mass cytometry data with bead standards
R Finck, EF Simonds, A Jager, S Krishnaswamy, K Sachs, W Fantl, ...
Cytometry Part A 83 (5), 483-494, 2013
Accurate reliability evaluation and enhancement via probabilistic transfer matrices
S Krishnaswamy, GF Viamontes, IL Markov, JP Hayes
Design, Automation and Test in Europe, 282-287, 2005
Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
ER Zunder, R Finck, GK Behbehani, DA El-ad, S Krishnaswamy, ...
Nature protocols 10 (2), 316-333, 2015
Visualizing structure and transitions in high-dimensional biological data
KR Moon, D van Dijk, Z Wang, S Gigante, DB Burkhardt, WS Chen, K Yim, ...
Nature biotechnology 37 (12), 1482-1492, 2019
Conditional density-based analysis of T cell signaling in single-cell data
S Krishnaswamy, MH Spitzer, M Mingueneau, SC Bendall, O Litvin, ...
Science 346 (6213), 2014
Probabilistic transfer matrices in symbolic reliability analysis of logic circuits
S Krishnaswamy, GF Viamontes, IL Markov, JP Hayes
ACM Transactions on Design Automation of Electronic Systems (TODAES) 13 (1 …, 2008
PD-1 marks dysfunctional regulatory T cells in malignant gliomas
DE Lowther, BA Goods, LE Lucca, BA Lerner, K Raddassi, D van Dijk, ...
JCI insight 1 (5), 2016
Exploring single-cell data with deep multitasking neural networks
M Amodio, D Van Dijk, K Srinivasan, WS Chen, H Mohsen, KR Moon, ...
Nature methods 16 (11), 1139-1145, 2019
Enhancing design robustness with reliability-aware resynthesis and logic simulation
S Krishnaswamy, SM Plaza, IL Markov, JP Hayes
2007 IEEE/ACM International Conference on Computer-Aided Design, 149-154, 2007
Signature-based SER analysis and design of logic circuits
S Krishnaswamy, SM Plaza, IL Markov, JP Hayes
IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2008
Manifold learning-based methods for analyzing single-cell RNA-sequencing data
KR Moon, JS Stanley III, D Burkhardt, D van Dijk, G Wolf, S Krishnaswamy
Current Opinion in Systems Biology 7, 36-46, 2018
DeltaSyn: An efficient logic difference optimizer for ECO synthesis
S Krishnaswamy, H Ren, N Modi, R Puri
2009 IEEE/ACM International Conference on Computer-Aided Design-Digest of …, 2009
Single-cell mass cytometry of TCR signaling: amplification of small initial differences results in low ERK activation in NOD mice
M Mingueneau, S Krishnaswamy, MH Spitzer, SC Bendall, EL Stone, ...
Proceedings of the National Academy of Sciences 111 (46), 16466-16471, 2014
On the role of timing masking in reliable logic circuit design
S Krishnaswamy, IL Markov, JP Hayes
2008 45th ACM/IEEE Design Automation Conference, 924-929, 2008
Travelgan: Image-to-image translation by transformation vector learning
M Amodio, S Krishnaswamy
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2019
Converged large block and structured synthesis for high performance microprocessor designs
M Cho, VN Kravets, S Krishnaswamy, D Kucar, J Narasimhan, R Puri, ...
US Patent 8,271,920, 2012
MAGAN: Aligning biological manifolds
M Amodio, S Krishnaswamy
International Conference on Machine Learning, 215-223, 2018
Quantifying the effect of experimental perturbations in single-cell RNA-sequencing data using graph signal processing
DB Burkhardt, JS Stanley, AL Perdigoto, SA Gigante, KC Herold, G Wolf, ...
BioRxiv, 532846, 2019
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