| Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015 | 480 | 2015 |
| Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, ... Gigascience 4 (1), s13742-015-0077-2, 2015 | 122 | 2015 |
| Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015 | 107 | 2015 |
| ProteoSign: an end-user online differential proteomics statistical analysis platform G Efstathiou, AN Antonakis, GA Pavlopoulos, T Theodosiou, P Divanach, ... Nucleic acids research 45 (W1), W300-W306, 2017 | 44 | 2017 |
| NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks T Theodosiou, G Efstathiou, N Papanikolaou, NC Kyrpides, PG Bagos, ... BMC research notes 10, 1-9, 2017 | 38 | 2017 |
| DrugQuest-a text mining workflow for drug association discovery N Papanikolaou, GA Pavlopoulos, T Theodosiou, IS Vizirianakis, ... BMC bioinformatics 17, 333-341, 2016 | 35 | 2016 |
| BioTextQuest + : a knowledge integration platform for literature mining and concept discovery N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ... Bioinformatics 30 (22), 3249-3256, 2014 | 32 | 2014 |
| Gene socialization: gene order, GC content and gene silencing in Salmonella N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos BMC genomics 10, 1-10, 2009 | 31 | 2009 |
| Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae M Tsochatzidou, M Malliarou, N Papanikolaou, J Roca, C Nikolaou Nucleic acids research 45 (10), 5818-5828, 2017 | 26 | 2017 |
| BioTextQuest: a web-based biomedical text mining suite for concept discovery N Papanikolaou, E Pafilis, S Nikolaou, CA Ouzounis, I Iliopoulos, ... Bioinformatics 27 (23), 3327-3328, 2011 | 21 | 2011 |
| The gene toolkit implicated in functional sex in Sparidae hermaphrodites: Inferences from comparative transcriptomics A Tsakogiannis, T Manousaki, J Lagnel, N Papanikolaou, ... Frontiers in Genetics 9, 749, 2019 | 19 | 2019 |
| Evidence for APOBEC3B mRNA and protein expression in oral squamous cell carcinomas G Fanourakis, K Tosios, N Papanikolaou, I Chatzistamou, M Xydous, ... Experimental and molecular pathology 101 (3), 314-319, 2016 | 14 | 2016 |
| The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence FE Psomopoulos, VI Siarkou, N Papanikolaou, I Iliopoulos, AS Tsaftaris, ... Genes 3 (2), 291-319, 2012 | 14 | 2012 |
| UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network T Theodosiou, N Papanikolaou, M Savvaki, G Bonetto, S Maxouri, ... NAR Genomics and Bioinformatics 2 (1), lqaa005, 2020 | 10 | 2020 |
| OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction E Pafilis, GA Pavlopoulos, VP Satagopam, N Papanikolaou, H Horn, ... 13th IEEE International Conference on BioInformatics and BioEngineering, 1-4, 2013 | 3 | 2013 |
| Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks SM Papoudas, N Papanikolaou, C Nikolaou Computational and Structural Biotechnology Journal 18, 220-229, 2020 | 2 | 2020 |
| Prediction and Ranking of Biomarkers Using multiple UniReD I Baltsavia, T Theodosiou, N Papanikolaou, GA Pavlopoulos, ... International Journal of Molecular Sciences 23 (19), 11112, 2022 | 1 | 2022 |
| BioTextQuest v2. 0: an evolved tool for Biomedical Literature mining and concept discovery. T Theodosiou, K Vrettos, I Baltsavia, F Baltoumas, N Papanikolaou, ... Computational and Structural Biotechnology Journal, 2024 | | 2024 |
| APOBEC3B Is Co-Expressed with PKCα/NF-κB in Oral and Oropharyngeal Squamous Cell Carcinomas G Fanourakis, E Kyrodimos, V Papanikolaou, A Chrysovergis, G Kafiri, ... Diagnostics 13 (3), 569, 2023 | | 2023 |
| Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks S Mavropoulos Papoudas, N Papanikolaou, C Nikolaou | | 2020 |
