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Nikolas Papanikolaou
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Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies
A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ...
Bioinformatics and biology insights 9, BBI. S12462, 2015
4622015
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, ...
Gigascience 4 (1), s13742-015-0077-2, 2015
1222015
Protein–protein interaction predictions using text mining methods
N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos
Methods 74, 47-53, 2015
1012015
ProteoSign: an end-user online differential proteomics statistical analysis platform
G Efstathiou, AN Antonakis, GA Pavlopoulos, T Theodosiou, P Divanach, ...
Nucleic acids research 45 (W1), W300-W306, 2017
422017
NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
T Theodosiou, G Efstathiou, N Papanikolaou, NC Kyrpides, PG Bagos, ...
BMC research notes 10, 1-9, 2017
352017
DrugQuest-a text mining workflow for drug association discovery
N Papanikolaou, GA Pavlopoulos, T Theodosiou, IS Vizirianakis, ...
BMC bioinformatics 17, 333-341, 2016
332016
BioTextQuest + : a knowledge integration platform for literature mining and concept discovery
N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ...
Bioinformatics 30 (22), 3249-3256, 2014
322014
Gene socialization: gene order, GC content and gene silencing in Salmonella
N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos
BMC genomics 10, 1-10, 2009
302009
Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae
M Tsochatzidou, M Malliarou, N Papanikolaou, J Roca, C Nikolaou
Nucleic acids research 45 (10), 5818-5828, 2017
282017
BioTextQuest: a web-based biomedical text mining suite for concept discovery
N Papanikolaou, E Pafilis, S Nikolaou, CA Ouzounis, I Iliopoulos, ...
Bioinformatics 27 (23), 3327-3328, 2011
212011
The gene toolkit implicated in functional sex in sparidae hermaphrodites: Inferences from comparative transcriptomics
A Tsakogiannis, T Manousaki, J Lagnel, CS Tsigenopoulos
Frontiers in Genetics 9, 417086, 2019
182019
Evidence for APOBEC3B mRNA and protein expression in oral squamous cell carcinomas
G Fanourakis, K Tosios, N Papanikolaou, I Chatzistamou, M Xydous, ...
Experimental and molecular pathology 101 (3), 314-319, 2016
142016
The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence
FE Psomopoulos, VI Siarkou, N Papanikolaou, I Iliopoulos, AS Tsaftaris, ...
Genes 3 (2), 291-319, 2012
132012
UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network
T Theodosiou, N Papanikolaou, M Savvaki, G Bonetto, S Maxouri, ...
NAR Genomics and Bioinformatics 2 (1), lqaa005, 2020
82020
OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction
E Pafilis, GA Pavlopoulos, VP Satagopam, N Papanikolaou, H Horn, ...
13th IEEE International Conference on BioInformatics and BioEngineering, 1-4, 2013
32013
Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks
SM Papoudas, N Papanikolaou, C Nikolaou
Computational and Structural Biotechnology Journal 18, 220-229, 2020
22020
APOBEC3B Is Co-Expressed with PKCα/NF-κB in Oral and Oropharyngeal Squamous Cell Carcinomas
G Fanourakis, E Kyrodimos, V Papanikolaou, A Chrysovergis, G Kafiri, ...
Diagnostics 13 (3), 569, 2023
2023
Prediction and Ranking of Biomarkers Using multiple UniReD
I Baltsavia, T Theodosiou, N Papanikolaou, GA Pavlopoulos, ...
International Journal of Molecular Sciences 23 (19), 11112, 2022
2022
Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks
S Mavropoulos Papoudas, N Papanikolaou, C Nikolaou
2020
Genome urbanization: Clusters of topologically co-regulated genes delineate functional compartments in the genome of S. cerevisiae
M Tsochatzidou, M Malliarou, J Roca, C Nikolaou
bioRxiv, 064667, 2016
2016
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Articles 1–20