Follow
Nawsad Alam
Title
Cited by
Cited by
Year
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5502020
Protein–peptide docking: opportunities and challenges
M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ...
Drug discovery today 23 (8), 1530-1537, 2018
2572018
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
N Alam, O Goldstein, B Xia, KA Porter, D Kozakov, O Schueler-Furman
PLoS computational biology 13 (12), e1005905, 2017
1252017
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT
KA Porter, B Xia, D Beglov, T Bohnuud, N Alam, O Schueler-Furman, ...
Bioinformatics 33 (20), 3299-3301, 2017
1012017
Structure-based identification of HDAC8 non-histone substrates
N Alam, L Zimmerman, NA Wolfson, CG Joseph, CA Fierke, ...
Structure 24 (3), 458-468, 2016
572016
Modeling peptide-protein structure and binding using Monte Carlo sampling approaches: Rosetta FlexPepDock and FlexPepBind
N Alam, O Schueler-Furman
Modeling Peptide-Protein Interactions: Methods and Protocols, 139-169, 2017
332017
FlexPepDock lessons from CAPRI peptide–protein rounds and suggested new criteria for assessment of model quality and utility
O Marcu, EJ Dodson, N Alam, M Sperber, D Kozakov, MF Lensink, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 445-462, 2017
202017
Escherichia coli Quorum-Sensing EDF, A Peptide Generated by Novel Multiple Distinct Mechanisms and Regulated by trans-Translation
S Kumar, I Kolodkin-Gal, O Vesper, N Alam, O Schueler-Furman, I Moll, ...
MBio 7 (1), 10.1128/mbio. 02034-15, 2016
162016
Host FIH-Mediated Asparaginyl Hydroxylation of Translocated Legionella pneumophila Effectors
C Price, M Merchant, S Jones, A Best, J Von Dwingelo, MB Lawrenz, ...
Frontiers in cellular and infection microbiology 7, 54, 2017
152017
Novel structural mechanism of allosteric regulation of aspartic peptidases via an evolutionarily conserved exosite
I Hánová, J Brynda, R Houštecká, N Alam, D Sojka, P Kopáček, ...
Cell Chemical Biology 25 (3), 318-329. e4, 2018
142018
Modeling beta‐sheet peptide‐protein interactions: Rosetta FlexPepDock in CAPRI rounds 38‐45
A Khramushin, O Marcu, N Alam, O Shimony, D Padhorny, E Brini, KA Dill, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1037-1049, 2020
112020
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking
D Padhorny, KA Porter, M Ignatov, A Alekseenko, D Beglov, S Kotelnikov, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1082-1090, 2020
82020
A spike with which to beat COVID-19?
N Alam, MK Higgins
Nature Reviews Microbiology, 2020
52020
The PfRCR complex bridges malaria parasite and erythrocyte during invasion
B Farrell, N Alam, MN Hart, A Jamwal, RJ Ragotte, H Walters-Morgan, ...
Nature 625 (7995), 578-584, 2024
32024
MinD-RNase E interplay controls localization of polar mRNAs in E. coli
S Kannaiah, O Goldberger, N Alam, G Barnabas, Y Pozniak, ...
The EMBO Journal 43 (4), 637-662, 2024
2024
Rational structure-guided design of a blood stage malaria vaccine immunogen presenting a single epitope from PfRH5
T Harrison, N Alam, B Farrell, D Quinkert, A Lias, L King, SJ Draper, ...
bioRxiv, 2024.02. 29.582763, 2024
2024
The system can't perform the operation now. Try again later.
Articles 1–16