Follow
Özgün Babur
Title
Cited by
Cited by
Year
Pathway Commons, a web resource for biological pathway data
EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ...
Nucleic acids research 39 (suppl_1), D685-D690, 2010
11792010
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
7262010
Integrative analysis identifies four molecular and clinical subsets in uveal melanoma
AG Robertson, J Shih, C Yau, EA Gibb, J Oba, KL Mungall, JM Hess, ...
Cancer cell 32 (2), 204-220. e15, 2017
6122017
Integrated analysis of TP53 gene and pathway alterations in the cancer genome atlas
LA Donehower, T Soussi, A Korkut, Y Liu, A Schultz, M Cardenas, X Li, ...
Cell reports 28 (5), 1370-1384. e5, 2019
3082019
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
2212020
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ...
Bioinformatics 18 (7), 996-1003, 2002
2052002
Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations
Ö Babur, M Gönen, BA Aksoy, N Schultz, G Ciriello, C Sander, E Demir
Genome biology 16 (1), 1-10, 2015
1592015
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ...
Nucleic acids research 48 (D1), D489-D497, 2020
1532020
Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells
A Korkut, W Wang, E Demir, BA Aksoy, X Jing, EJ Molinelli, Ö Babur, ...
Elife 4, 2015
962015
An ontology for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ...
Bioinformatics 20 (3), 349-356, 2004
762004
Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization
U Dogrusoz, EZ Erson, E Giral, E Demir, O Babur, A Cetintas, R Colak
Bioinformatics 22 (3), 374-375, 2006
752006
Large-scale automated machine reading discovers new cancer-driving mechanisms
MA Valenzuela-Escárcega, Ö Babur, G Hahn-Powell, D Bell, T Hicks, ...
Database 2018, 2018
722018
Using biological pathway data with paxtools
E Demir, Ö Babur, I Rodchenkov, BA Aksoy, KI Fukuda, B Gross, ...
PLoS computational biology 9 (9), e1003194, 2013
692013
ChiBE: interactive visualization and manipulation of BioPAX pathway models
O Babur, U Dogrusoz, E Demir, C Sander
Bioinformatics 26 (3), 429-431, 2010
612010
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
602021
PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data
I Bahceci, U Dogrusoz, KC La, Ö Babur, J Gao, N Schultz
Bioinformatics 33 (14), 2238-2240, 2017
402017
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
382021
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles
BA Aksoy, E Demir, Ö Babur, W Wang, X Jing, N Schultz, C Sander
Bioinformatics 30 (14), 2051-2059, 2014
382014
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge
Ö Babur, A Luna, A Korkut, F Durupinar, MC Siper, U Dogrusoz, ...
Patterns 2 (6), 100257, 2021
372021
Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs
Ö Babur, AR Melrose, JM Cunliffe, J Klimek, J Pang, ALI Sepp, ...
Blood 136 (20), 2346-2358, 2020
362020
The system can't perform the operation now. Try again later.
Articles 1–20