Spencer E Bliven

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Andreas PrlicUCSD / SDSCVerified email at sdsc.edu
Philip E. BourneUniversity of VirginiaVerified email at virginia.edu
Peter W. RoseUniversity of California San DiegoVerified email at ucsd.edu
Aleix LafitaPhD fellow, European Bioinformatics InstituteVerified email at ebi.ac.uk
Jose M DuarteRCSB PDB, UC San DiegoVerified email at rcsb.org
Wolfgang BluhmUniversity of California, San DiegoVerified email at ucsd.edu
Michael Heuerdishevelled.orgVerified email at acm.org
Kumaran BaskaranUCONN HealthVerified email at uchc.edu
JianJiong GaoMemorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
Chuan Hock KohNational University of SingaporeVerified email at alumni.nus.edu.sg
Andrew D YatesEuropean Molecular Biology Laboratory, European Bioinformatics InstituteVerified email at ebi.ac.uk
Adam GodzikProfessor, University of California Riverside School of MedicineVerified email at medsch.ucr.edu
Chris BizonDirector of Analytics and Data Science, RENCI, University of North CarolinaVerified email at renci.org
Philippe YoukharibacheNIHVerified email at sdsc.edu
Stephen K. Burley, M.D., D.Phil.Institute for Quantitative Biomedicine, Rutgers UniversityVerified email at proteomics.rutgers.edu
Nikhil BiyaniMaxWell BiosystemsVerified email at mxwbio.com
Lei XieProfesssor, Hunter College, CUNY; Adjunct Professor, WCM, Cornell UniversityVerified email at hunter.cuny.edu
Zheng Zhao (zz7r@virginia.edu)School of Data Science and Department of Biomedical Engineering, University of VirginiaVerified email at mail.ustc.edu.cn
Tobias WeinertPaul Scherrer InstitutVerified email at psi.ch
Nathan MihVerified email at eng.ucsd.edu

Spencer E Bliven

Paul Scherrer Institute

Verified email at psi.ch - Homepage

Computational Biology Protein Evolution Protein Structure Open Science Repeat proteins


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BioJava: an open-source framework for bioinformatics in 2012 A Prlić, A Yates, SE Bliven, PW Rose, J Jacobsen, PV Troshin, ... Bioinformatics 28 (20), 2693-2695, 2012	197	2012
Pre-calculated protein structure alignments at the RCSB PDB website A Prlić, S Bliven, PW Rose, WF Bluhm, C Bizon, A Godzik, PE Bourne Bioinformatics 26 (23), 2983-2985, 2010	193	2010
Determining cysteines available for covalent inhibition across the human kinome Z Zhao, Q Liu, S Bliven, L Xie, PE Bourne Journal of medicinal chemistry 60 (7), 2879-2889, 2017	65	2017
Structure of the Full-length VEGFR-1 Extracellular Domain in Complex with VEGF-A S Markovic-Mueller, E Stuttfeld, M Asthana, T Weinert, S Bliven, ... Structure 25 (2), 341-352, 2017	52	2017
Circular permutation in proteins S Bliven, A Prlić PLoS Comput Biol 8 (3), e1002445, 2012	48	2012
Systems biology of the structural proteome E Brunk, N Mih, J Monk, Z Zhang, EJ O’Brien, SE Bliven, K Chen, ... BMC systems biology 10 (1), 1-16, 2016	44	2016
A PDB-wide, evolution-based assessment of protein-protein interfaces K Baskaran, JM Duarte, N Biyani, S Bliven, G Capitani BMC Structural Biology 14 (1), 1-11, 2014	43	2014
Systematic detection of internal symmetry in proteins using CE-Symm D Myers-Turnbull, SE Bliven, PW Rose, ZK Aziz, P Youkharibache, ... Journal of molecular biology 426 (11), 2255-2268, 2014	43	2014
Automated evaluation of quaternary structures from protein crystals S Bliven, A Lafita, A Parker, G Capitani, JM Duarte PLoS computational biology 14 (4), e1006104, 2018	40	2018
Determining crystal structures through crowdsourcing and coursework S Horowitz, B Koepnick, R Martin, A Tymieniecki, AA Winburn, S Cooper, ... Nature communications 7 (1), 1-11, 2016	30	2016
Assessment of protein assembly prediction in CASP12 A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ... Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018	28	2018
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts G Capitani, JM Duarte, K Baskaran, S Bliven, JC Somody Bioinformatics 32 (4), 481-489, 2016	26	2016
BioJava 5: A community driven open-source bioinformatics library A Lafita, S Bliven, A Prlić, D Guzenko, PW Rose, A Bradley, P Pavan, ... PLoS computational biology 15 (2), e1006791, 2019	19	2019
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm SE Bliven, A Lafita, PW Rose, G Capitani, A Prlić, PE Bourne PLoS computational biology 15 (4), e1006842, 2019	13	2019
Detection of circular permutations within protein structures using CE-CP SE Bliven, PE Bourne, A Prlić Bioinformatics 31 (8), 1316-1318, 2015	7	2015
Biological and functional relevance of CASP predictions T Liu, S Ish‐Shalom, W Torng, A Lafita, C Bock, M Mort, DN Cooper, ... Proteins: Structure, Function, and Bioinformatics 86, 374-386, 2018	6	2018
Molql: Towards a Common General Purpose Molecular Query Language AS Rose, D Sehnal, S Bliven, SK Burley, S Velankar Biophysical Journal 114 (3), 342a, 2018	3	2018
Automated evaluation of quaternary structures from protein crystal structures JM Duarte, S Bliven, A Lafita, G Capitani, SK Burley Acta Crystallogr. Sect. A Found. Adv 73, a117, 2017	1	2017
Structure-Preserving Rearrangements: Algorithms for Structural Comparison and Protein Analysis SE Bliven UC San Diego, 2015	1	2015
TRAL 2.0: Tandem Repeat Detection with Circular Profile Hidden Markov Models and Evolutionary Aligner M Delucchi, P Näf, S Bliven, M Anisimova Frontiers in Bioinformatics 1, 20, 2021		2021

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