John Eargle
John Eargle
L7 Informatics
Verified email at l7informatics.com - Homepage
Title
Cited by
Cited by
Year
Dynamical networks in tRNA: protein complexes
A Sethi, J Eargle, AA Black, Z Luthey-Schulten
Proceedings of the National Academy of Sciences 106 (16), 6620-6625, 2009
5132009
MultiSeq: unifying sequence and structure data for evolutionary analysis
E Roberts, J Eargle, D Wright, Z Luthey-Schulten
BMC bioinformatics 7 (1), 1-11, 2006
3462006
Multiple Alignment of protein structures and sequences for VMD
J Eargle, D Wright, Z Luthey-Schulten
Bioinformatics 22 (4), 504-506, 2006
1322006
Exploring residue component contributions to dynamical network models of allostery
AT VanWart, J Eargle, Z Luthey-Schulten, RE Amaro
Journal of chemical theory and computation 8 (8), 2949-2961, 2012
1312012
NetworkView: 3D display and analysis of protein·RNA interaction networks
J Eargle, Z Luthey-Schulten
Bioinformatics 28 (22), 3000-3001, 2012
1162012
The role of L1 stalk–tRNA interaction in the ribosome elongation cycle
LG Trabuco, E Schreiner, J Eargle, P Cornish, T Ha, Z Luthey-Schulten, ...
Journal of molecular biology 402 (4), 741-760, 2010
1132010
Dynamics of recognition between tRNA and elongation factor Tu
J Eargle, AA Black, A Sethi, LG Trabuco, Z Luthey-Schulten
Journal of molecular biology 377 (5), 1382-1405, 2008
882008
Experimental and computational determination of tRNA dynamics
RW Alexander, J Eargle, Z Luthey-Schulten
FEBS letters 584 (2), 376-386, 2010
692010
MetaBase—the wiki-database of biological databases
DM Bolser, PY Chibon, N Palopoli, S Gong, D Jacob, VD Del Angel, ...
Nucleic Acids Research 40 (D1), D1250-D1254, 2012
492012
Exit strategies for charged tRNA from GluRS
AB Pyrkosz, J Eargle, A Sethi, Z Luthey-Schulten
Journal of molecular biology 397 (5), 1350-1371, 2010
302010
Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Go simulations
K Chen, J Eargle, J Lai, H Kim, S Abeysirigunawardena, M Mayerle, ...
The Journal of Physical Chemistry B 116 (23), 6819-6831, 2012
262012
Functional role of ribosomal signatures
K Chen, J Eargle, K Sarkar, M Gruebele, Z Luthey-Schulten
Biophysical journal 99 (12), 3930-3940, 2010
232010
Dynamical Network Analysis
J Stone, NT Developers, J Eargle, A Sethi, L Li, Z Luthey-Schulten
92012
Simulating dynamics in RNA–protein complexes
J Eargle, Z Luthey-Schulten
RNA 3D Structure Analysis and Prediction, 213-238, 2012
62012
Evolution of biomolecular structure
E Roberts, J Eargle, D Wright, Z Luthey-Schulten, P O’Donoghue, A Sethi, ...
52006
Visualizing the dual space of biological molecules
J Eargle, Z Luthey-Schulten
Computational biology and chemistry 30 (3), 219-226, 2006
22006
Simulation and visualization of dynamics in RNA-protein complexes in translation
J Eargle
University of Illinois at Urbana-Champaign, 2010
12010
Evolution of Translation The Ribosome
J Stone, MS Developers, E Roberts, K Chen, J Eargle, D Wright, T Earnest, ...
2015
Evolution of Translation EF-Tu: tRNA
J Stone, MS Developers, E Roberts, K Chen, J Eargle, D Wright, ...
2014
Dynamical network models of allostery for hisH-hisF without alpha-carbons
AT VanWart, J Eargle, Z Luthey-Schulten, RE Amaro
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 245, 2013
2013
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