João André Carriço
João André Carriço
Researcher, Faculty of Medicine, University of Lisbon
Verified email at fm.ul.pt - Homepage
TitleCited byYear
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13 (1), 87, 2012
3122012
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
A Francisco, M Bugalho, M Ramirez, J Carriço
BMC bioinformatics 10 (1), 152, 2009
2992009
Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes
JA Carrico, C Silva-Costa, J Melo-Cristino, FR Pinto, H De Lencastre, ...
Journal of clinical microbiology 44 (7), 2524-2532, 2006
2782006
Analysis of genomic sequences by Chaos Game Representation
JS Almeida, JA Carrico, A Maretzek, PA Noble, M Fletcher
Bioinformatics 17 (5), 429-437, 2001
2122001
Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains
NA Faria, JA Carrico, DC Oliveira, M Ramirez, H de Lencastre
Journal of clinical microbiology 46 (1), 136, 2008
1482008
Effect of the seven-valent conjugate pneumococcal vaccine on carriage and drug resistance of Streptococcus pneumoniae in healthy children attending day-care centers in Lisbon
N Frazão, A Brito-Avô, C Simas, J Saldanha, R Mato, S Nunes, NG Sousa, ...
The Pediatric infectious disease journal 24 (3), 243, 2005
1302005
Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis
JA Carrico, FR Pinto, C Simas, S Nunes, NG Sousa, N Frazao, ...
Journal of clinical microbiology 43 (11), 5483, 2005
1292005
Adjusted Wallace coefficient as a measure of congruence between typing methods
A Severiano, FR Pinto, M Ramirez, JA Carriço
Journal of clinical microbiology 49 (11), 3997-4000, 2011
1252011
Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination
M Miragaia, I Couto, SFF Pereira, KG Kristinsson, H Westh, JO Jarlov, ...
Journal of clinical microbiology 40 (2), 430, 2002
1172002
High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study
R Sá-Leão, S Nunes, A Brito-Avô, CR Alves, JA Carriço, J Saldanha, ...
Journal of clinical microbiology 46 (1), 225-234, 2008
1102008
Comparison of molecular typing methods for characterization of Staphylococcus epidermidis: proposal for clone definition
M Miragaia, JA Carrico, JC Thomas, I Couto, MC Enright, H De Lencastre
Journal of clinical microbiology 46 (1), 118-129, 2008
1062008
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
M Nascimento, A Sousa, M Ramirez, AP Francisco, JA Carriço, C Vaz
Bioinformatics 33 (1), 128-129, 2016
812016
Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones …
R Sá-Leão, F Pinto, S Aguiar, S Nunes, JA Carriço, N Frazão, ...
Journal of clinical microbiology 49 (4), 1369-1375, 2011
772011
Trends in drug resistance, serotypes, and molecular types of Streptococcus pneumoniae colonizing preschool-age children attending day care centers in Lisbon, Portugal: a …
S Nunes, R Sa-Leao, J Carriço, CR Alves, R Mato, AB Avô, J Saldanha, ...
Journal of clinical microbiology 43 (3), 1285, 2005
662005
Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution
JA Carrico, AJ Sabat, AW Friedrich, M Ramirez
Eurosurveillance 18 (4), 20382, 2013
592013
Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal
I Serrano, J Melo-Cristino, JA Carriço, M Ramirez
Journal of clinical microbiology 43 (4), 1706, 2005
592005
Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures
A Severiano, JA Carriço, DA Robinson, M Ramirez, FR Pinto
PLoS One 6 (5), e19539, 2011
492011
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ...
Genome research 28 (9), 1395-1404, 2018
442018
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
B Ribeiro-Gonçalves, AP Francisco, C Vaz, M Ramirez, JA Carriço
Nucleic acids research 44 (W1), W246-W251, 2016
442016
Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance
AS Simões, R Sá-Leão, MJ Eleveld, DA Tavares, JA Carriço, HJ Bootsma, ...
Journal of clinical microbiology 48 (1), 238-246, 2010
352010
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Articles 1–20