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Robert Calef
Robert Calef
Unknown affiliation
Verified email at grailbio.com
Title
Cited by
Cited by
Year
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ...
Annals of Oncology 31 (6), 745-759, 2020
9642020
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ...
Genome research 26 (3), 342-350, 2016
7152016
Deeply conserved synteny resolves early events in vertebrate evolution
O Simakov, F Marlétaz, JX Yue, B O’Connell, J Jenkins, A Brandt, R Calef, ...
Nature Ecology & Evolution 4 (6), 820-830, 2020
2492020
Evaluation of cell-free DNA approaches for multi-cancer early detection
A Jamshidi, MC Liu, EA Klein, O Venn, E Hubbell, JF Beausang, S Gross, ...
Cancer Cell 40 (12), 1537-1549. e12, 2022
892022
Convolutional neural network systems and methods for data classification
V Nicula, A Valouev, D Filippova, MH Larson, MC MAHER, ...
US Patent 11,482,303, 2022
72022
Method and system for selecting, managing, and analyzing data of high dimensionality
D Filippova, A Valouev, V Nicula, K Jagadeesh, MC MAHER, MH Larson, ...
US Patent App. 16/352,739, 2019
52019
Model-based featurization and classification
AP Fields, JF Beausang, OC Venn, A Jamshidi, MC MAHER, Q Liu, ...
US Patent App. 15/931,022, 2020
42020
Systems and methods for enriching for cancer-derived fragments using fragment size
D Filippova, MH Larson, MC MAHER, MP dos Santos Pimentel, ...
US Patent 11,929,148, 2024
32024
The Circulating Cell-free Genome Atlas (CCGA) study: size selection of cell-free DNA (cfDNA) fragments
D Filippova, MH Larson, MC Maher, R Calef, M Pimentel, Y Zhou, ...
J Clin Oncol 37, 2019
32019
HPV-driven cancers show distinct methylation signatures in cell-free DNA (cfDNA)
R Calef, O Venn, MC Maher, JF Beausang, E Hubbell, A Patel, AP Fields, ...
Cancer Research 80 (16), 2020
12020
Identification of cancer subtypes with a ctDNA-based targeted methylation assay
T Nance, T Shaver, Y Zhou, M Antonio, Y Gao, J Heiss, R Calef, J Hiatt, ...
Breast 58, 21, 2024
2024
Convolutional neural network systems and methods for data classification
V Nicula, A VALOUEV, D Filippova, MH Larson, MC MAHER, ...
US Patent App. 18/240,489, 2024
2024
Systems and methods for detecting disease subtypes
T Nance, J Bredno, OC Venn, RAP Calef, J Tom
US Patent App. 18/362,342, 2024
2024
Systems and methods for performing additive smoothing on low-coverage sequencing data from a nucleic acid sample
RAP Calef, EM Scott, K Samuel-gama
US Patent App. 18/194,250, 2023
2023
Convolutional neural network systems and methods for data classification
V Nicula, A Valouev, D Filippova, MH Larson, MC MAHER, ...
US Patent 11,783,915, 2023
2023
Systems and methods for classifying patients with respect to multiple cancer classes
MC MAHER, A Valouev, D Filippova, V Nicula, K Jagadeesh, OC Venn, ...
US Patent App. 18/151,197, 2023
2023
Systems and methods for classifying patients with respect to multiple cancer classes
MC MAHER, A Valouev, D Filippova, V Nicula, K Jagadeesh, OC Venn, ...
US Patent 11,581,062, 2023
2023
Systems and methods for estimating cell source fractions using methylation information
J Xiang, RAP CALEF
2022
Conditional tissue of origin return for localization accuracy
OC Venn, PD Freese, SS Gross, RAP Calef, A Jamshidi
US Patent App. 17/714,062, 2022
2022
Detecting cross-contamination in sequencing data
O Sakarya, CJAV Yakym, PP Singh, RAP Calef, R Huang
US Patent App. 17/478,856, 2022
2022
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