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John Rhodes
John Rhodes
Professor of Mathematics, University of Alaska Fairbanks
Verified email at alaska.edu
Title
Cited by
Cited by
Year
Identifiability of parameters in latent structure models with many observed variables
ES Allman, C Matias, JA Rhodes
6612009
Mathematical models in biology: an introduction
ES Allman, JA Rhodes
Cambridge University Press, 2004
3832004
Phylogenetic ideals and varieties for the general Markov model
ES Allman, JA Rhodes
Advances in Applied Mathematics 40 (2), 127-148, 2008
1922008
Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
ES Allman, JH Degnan, JA Rhodes
Journal of mathematical biology 62, 833-862, 2011
1652011
Phylogenetic invariants for the general Markov model of sequence mutation
ES Allman, JA Rhodes
Mathematical biosciences 186 (2), 113-144, 2003
1422003
Relativistic velocity space, Wigner rotation and Thomas precession
JA Rhodes, MD Semon
arXiv preprint gr-qc/0501070, 2005
1362005
The identifiability of tree topology for phylogenetic models, including covarion and mixture models
ES Allman, JA Rhodes
Journal of Computational Biology 13 (5), 1101-1113, 2006
922006
Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
ES Allman, C Ané, JA Rhodes
Advances in Applied Probability 40 (1), 229-249, 2008
752008
A concise proof of Kruskal’s theorem on tensor decomposition
JA Rhodes
Linear Algebra and its Applications 432 (7), 1818-1824, 2010
722010
NANUQ: a method for inferring species networks from gene trees under the coalescent model
ES Allman, H Baños, JA Rhodes
Algorithms for Molecular Biology 14, 1-25, 2019
712019
Parameter identifiability in a class of random graph mixture models
ES Allman, C Matias, JA Rhodes
Journal of Statistical Planning and Inference 141 (5), 1719-1736, 2011
592011
Identifiability of two-tree mixtures for group-based models
ES Allman, S Petrović, JA Rhodes, S Sullivant
IEEE/ACM transactions on computational biology and bioinformatics 8 (3), 710-722, 2010
572010
Phylogenetic invariants
ES Allman, JA Rhodes
Reconstructing evolution: new mathematical and computational advances, 108-146, 2007
562007
Identifiability of large phylogenetic mixture models
JA Rhodes, S Sullivant
Bulletin of mathematical biology 74, 212-231, 2012
542012
Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
ES Allman, JA Rhodes
Mathematical Biosciences 211 (1), 18-33, 2008
522008
Tensors of nonnegative rank two
ES Allman, JA Rhodes, B Sturmfels, P Zwiernik
Linear algebra and its applications 473, 37-53, 2015
482015
Species tree inference from gene splits by unrooted STAR methods
ES Allman, JH Degnan, JA Rhodes
IEEE/ACM transactions on computational biology and bioinformatics 15 (1 …, 2016
432016
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R
JA Rhodes, H Baños, JD Mitchell, ES Allman
Bioinformatics 37 (12), 1766-1768, 2021
392021
A semialgebraic description of the general Markov model on phylogenetic trees
ES Allman, JA Rhodes, A Taylor
SIAM Journal on Discrete Mathematics 28 (2), 736-755, 2014
362014
Split scores: a tool to quantify phylogenetic signal in genome-scale data
ES Allman, LS Kubatko, JA Rhodes
Systematic Biology 66 (4), 620-636, 2017
352017
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