Torgeir R. Hvidsten

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Jan KomorowskiUppsala University, Sweden & IPI, Polish Academy of Sciences, PolandVerified email at icm.uu.se
Nathaniel Robert StreetAssociate Professor, Umeå Plant Science Centre, Department of Plant Physiology, Umeå UniversityVerified email at umu.se
Simen R. SandveNorwegian university of life sciencesVerified email at nmbu.no
Niklas MählerUmeå Plant Science Centre, Umeå UniversityVerified email at umu.se
Andriy KryshtafovychUniversity of California, DavisVerified email at ucdavis.edu
Nicolas DelhommeResearcher, UPSC, Swedish University of Agricultural SciencesVerified email at slu.se
Chanaka MannapperumaUmeå UniversityVerified email at umu.se
Stefan JanssonProfessor in plant cell and molecular biology, Umeå Plant Sience Centre, Umeå UniversityVerified email at plantphys.umu.se
AK SandvikVerified email at ntnu.no
Hannele TuominenProfessor, Swedish University of Agricultural SciencesVerified email at slu.se
Patrik RydénDept. of Mathematics and Mathematical Statistics, Umeå UniversityVerified email at math.umu.se
Johan TryggProfessor in Chemometrics, Umeå University, SwedenVerified email at chem.umu.se
Pär K IngvarssonSwedish University of Agricultural Sciences, Department of Plant biologyVerified email at slu.se
Bastian SchiffthalerUmeå Plant Science Center - BioinformaticsVerified email at umu.se
Sigbjørn LienNorwegian University of Life SciencesVerified email at nmbu.no
Yao-Cheng LinAssistant Research Fellow, Agricultural Biotechnology Research Center, Academia Sinica, TaiwanVerified email at sinica.edu.tw
Yves Van de PeerProfessor in Bioinformatics and Genome Biology, Ghent University, BelgiumVerified email at psb.ugent.be
Daniel J. MacqueenProfessor, The Roslin Institute, University of EdinburghVerified email at roslin.ed.ac.uk
Ernst WitProfessor of Statistics and Data Science, Universita della Svizzera italiana, COSTNET CA15109Verified email at rug.nl
Nicol KeithProfessor of Molecular Oncology, Glasgow UniversityVerified email at glasgow.ac.uk

Torgeir R. Hvidsten

Professor, Norwegian University of Life Sciences

Verified email at nmbu.no - Homepage

Bioinformatics Gene regulatory networks Comparative regulomics Plants Salmonids


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The Norway spruce genome sequence and conifer genome evolution B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ... Nature 497 (7451), 579-584, 2013	1104	2013
The Atlantic salmon genome provides insights into rediploidization S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, ... Nature 533 (7602), 200-205, 2016	577	2016
Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm JL Dennis, TR Hvidsten, EC Wit, J Komorowski, AK Bell, I Downie, ... Clinical Cancer Research 11 (10), 3766-3772, 2005	347	2005
Genome interplay in the grain transcriptome of hexaploid bread wheat M Pfeifer, KG Kugler, SR Sandve, B Zhan, H Rudi, TR Hvidsten, ... Science 345 (6194), 2014	217	2014
The Plant genome integrative explorer resource: PlantGen IE. org D Sundell, C Mannapperuma, S Netotea, N Delhomme, YC Lin, A Sjödin, ... New Phytologist 208 (4), 1149-1156, 2015	151	2015
Learning rule-based models of biological process from gene expression time profiles using gene ontology TR Hvidsten, A Lægreid, J Komorowski Bioinformatics 19 (9), 1116-1123, 2003	137	2003
Predicting gene ontology biological process from temporal gene expression patterns A Lægreid, TR Hvidsten, H Midelfart, J Komorowski, AK Sandvik Genome research 13 (5), 965-979, 2003	135	2003
Predicting gene function from gene expressions and ontologies TR Hvidsten, J Komorowski, AK Sandvik, A Lægreid Pacific Symposium on Biocomputing 6, 299-310, 2001	114	2001
Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication S Tylewicz, A Petterle, S Marttila, P Miskolczi, A Azeez, RK Singh, ... Science 360 (6385), 212-215, 2018	107	2018
AspWood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in Populus tremula D Sundell, NR Street, M Kumar, EJ Mellerowicz, M Kucukoglu, ... The Plant Cell 29 (7), 1585-1604, 2017	104	2017
Activity–dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen K Baba, A Karlberg, J Schmidt, J Schrader, TR Hvidsten, L Bako, ... Proceedings of the National Academy of Sciences 108 (8), 3418-3423, 2011	95	2011
Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification FM Robertson, MK Gundappa, F Grammes, TR Hvidsten, AK Redmond, ... Genome biology 18 (1), 1-14, 2017	85	2017
Gene co-expression network connectivity is an important determinant of selective constraint N Mähler, J Wang, BK Terebieniec, PK Ingvarsson, NR Street, ... PLoS genetics 13 (4), e1006402, 2017	65	2017
Discovering regulatory binding-site modules using rule-based learning TR Hvidsten, B Wilczyński, A Kryshtafovych, J Tiuryn, J Komorowski, ... Genome research 15 (6), 856-866, 2005	56	2005
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI-superoxide dismutase Populus … V Srivastava, O Obudulu, J Bygdell, T Löfstedt, P Rydén, R Nilsson, ... Bmc Genomics 14 (1), 1-16, 2013	53	2013
Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering E Freyhult, M Landfors, J Önskog, TR Hvidsten, P Rydén BMC bioinformatics 11 (1), 503, 2010	50	2010
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa S Netotea, D Sundell, NR Street, TR Hvidsten BMC genomics 15 (1), 1-17, 2014	48	2014
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts P Björkholm, P Daniluk, A Kryshtafovych, K Fidelis, R Andersson, ... Bioinformatics 25 (10), 1264-1270, 2009	48	2009
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity TR Hvidsten, A Lægreid, A Kryshtafovych, G Andersson, K Fidelis, ... PLoS ONE 4 (7), e6266, 2009	47	2009
Generalized modeling of enzyme–ligand interactions using proteochemometrics and local protein substructures H Strömbergsson, A Kryshtafovych, P Prusis, K Fidelis, JES Wikberg, ... Proteins: Structure, Function, and Bioinformatics 65 (3), 568-579, 2006	47	2006

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