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Vahid Jalili
Vahid Jalili
Computational Scientist II, Broad Institute of MIT and Harvard
Verified email at broad.mit.edu
Title
Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
38462018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
4302020
How machine learning will transform biomedicine
J Goecks, V Jalili, LM Heiser, JW Gray
Cell 181 (1), 92-101, 2020
3632020
GenoMetric Query Language: a novel approach to large-scale genomic data management
M Masseroli, P Pinoli, F Venco, A Kaitoua, V Jalili, F Palluzzi, H Muller, ...
Bioinformatics 31 (12), 1881-1888, 2015
1282015
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
912022
Using combined evidence from replicates to evaluate ChIP-seq peaks
V Jalili, M Matteucci, M Masseroli, MJ Morelli
Bioinformatics 31 (17), 2761-2769, 2015
732015
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
PLoS computational biology 17 (6), e1009014, 2021
172021
Next generation indexing for genomic intervals
V Jalili, M Matteucci, J Goecks, Y Deldjoo, S Ceri
IEEE Transactions on Knowledge and Data Engineering 31 (10), 2008-2021, 2018
152018
MuSERA: multiple sample enriched region assessment
V Jalili, M Matteucci, MJ Morelli, M Masseroli
Briefings in bioinformatics 18 (3), 367-381, 2017
132017
Indexing next-generation sequencing data
V Jalili, M Matteucci, M Masseroli, S Ceri
Information Sciences 384, 90-109, 2017
132017
Federated galaxy: Biomedical computing at the frontier
E Afgan, V Jalili, N Goonasekera, J Taylor, J Goecks
2018 IEEE 11th International Conference on Cloud Computing (CLOUD), 871-874, 2018
122018
Systematic evaluation of genome sequencing for the diagnostic assessment of autism spectrum disorder and fetal structural anomalies
C Lowther, E Valkanas, JL Giordano, HZ Wang, BB Currall, K O’Keefe, ...
The American Journal of Human Genetics 110 (9), 1454-1469, 2023
92023
Cloud bursting galaxy: federated identity and access management
V Jalili, E Afgan, J Taylor, J Goecks
Bioinformatics 36 (1), 1-9, 2020
82020
Explorative visual analytics on interval-based genomic data and their metadata
V Jalili, M Matteucci, M Masseroli, S Ceri
BMC bioinformatics 18, 1-15, 2017
62017
Systematic evaluation of genome sequencing for the assessment of fetal structural anomalies
C Lowther, E Valkanas, JL Giordano, HZ Wang, BB Currall, K O’Keefe, ...
BioRxiv, 2020.08. 12.248526, 2020
32020
Accessible, Reproducible, and Scalable Machine Learning for Biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
bioRxiv, 2020.06. 25.172445, 2020
12020
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes
V Jalili
arXiv preprint arXiv:1709.00158, 2017
12017
Efficient data structures for cross-samples inferences on genomic data
V Jalili
Politecnico di Milano, 2016
12016
Rescuing biologically relevant consensus regions across replicated samples
V Jalili, MA Cremona, F Palluzzi
BMC bioinformatics 24 (1), 240, 2023
2023
Adding software to package management systems can increase their citation by 280%
V Jalili, D Clements, B Grüning, D Blankenberg, J Goecks
bioRxiv, 2020.11. 16.385211, 2020
2020
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