Miquel Duran-Frigola

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Patrick AloyICREA Research Professor at the Institute for Research in BiomedicineVerified email at irbbarcelona.org
Martino BertoniInstitute for Research in BiomedicineVerified email at irbbarcelona.org
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Adrià Fernández-TorrasAI researcher and Data Scientist in Drug DiscoveryVerified email at chemotargets.com
Lidia MateoPhD student at IRB BarcelonaVerified email at irbbarcelona.org
Jake PryUC Davis; Centre for Infectious Disease Research in Zambia (CIDRZ)Verified email at ucdavis.edu
Mehdi DamaghiAssistant professor at Stony Brook medicine, dept of pathology and SB cancer centerVerified email at stonybrookmedicine.edu
Robert GilliesChair of Cancer Physiology, H. Lee Moffitt Cancer CenterVerified email at moffitt.org
Pau Badia-i-MompelHeidelberg UniversityVerified email at uni-heidelberg.de
David Amat OlóndrizGlovoVerified email at glovoapp.com
Gemma TuronErsilia Open Source InitiativeVerified email at ersilia.io
Santi Nonell (ORCID: 0000-0002-890...IQS-University Ramon Llull (ROR: 04y3yya25)Verified email at iqs.es
David Sánchez-GarcíaProfessor of Chemistry. Institut Químic de Sarrià. Universitat Ramon LlullVerified email at iqs.edu
Nuria VillegasVerified email at irbbarcelona.org
Albert ManasyanAssociate Professor, University of Alabama at BirminghamVerified email at uabmc.edu
Montserrat Soler-LopezStructural Biology, European Synchrotron Radiation FacilityVerified email at esrf.fr
Eduard BatlleICREA and Oncology Program, Institute for Research in Biomedicine (IRB Barcelona)Verified email at irbbarcelona.org
Matthias SelbachProfessor, Max Delbruck Center for Molecular MedicineVerified email at mdc-berlin.de
Francisco M. BarrigaGroup Leader - Vall D´Hebron Institute of OncologyVerified email at vhio.net
Modesto OrozcoProfessor of Biochemistry, Universtity of BarcelonaVerified email at irbbarcelona.org

Miquel Duran-Frigola

Ersilia Open Source Initiative

Verified email at ersilia.io - Homepage

Computational Biology Drug Discovery Systems Pharmacology Network Biology


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A reference map of the human binary protein interactome K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ... Nature 580 (7803), 402-408, 2020	902	2020
Widespread expansion of protein interaction capabilities by alternative splicing X Yang, J Coulombe-Huntington, S Kang, GM Sheynkman, T Hao, ... Cell 164 (4), 805-817, 2016	544	2016
Systems analysis of intracellular pH vulnerabilities for cancer therapy E Persi, M Duran-Frigola, M Damaghi, WR Roush, P Aloy, JL Cleveland, ... Nature communications 9 (1), 2997, 2018	337	2018
Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker M Duran-Frigola, E Pauls, O Guitart-Pla, M Bertoni, V Alcalde, D Amat, ... Nature Biotechnology 38 (9), 1087-1096, 2020	113*	2020
Isolation of human colon stem cells using surface expression of PTK7 P Jung, C Sommer, FM Barriga, SJ Buczacki, X Hernando-Momblona, ... Stem Cell Reports 5 (6), 979-987, 2015	67	2015
Analysis of chemical and biological features yields mechanistic insights into drug side effects M Duran-Frigola, P Aloy Chemistry & biology 20 (4), 594-603, 2013	57	2013
Residues coevolution guides the systematic identification of alternative functional conformations in proteins P Sfriso, M Duran-Frigola, R Mosca, A Emperador, P Aloy, M Orozco Structure 24 (1), 116-126, 2016	54	2016
Recycling side-effects into clinical markers for drug repositioning M Duran-Frigola, P Aloy Genome Medicine 4 (1), 1-4, 2012	54	2012
Drug sensitivity in cancer cell lines is not tissue-specific S Jaeger, M Duran-Frigola, P Aloy Molecular cancer 14, 1-4, 2015	51	2015
Structural systems pharmacology: the role of 3D structures in next-generation drug development M Duran-Frigola, R Mosca, P Aloy Chemistry & biology 20 (5), 674-684, 2013	51	2013
Bioactivity descriptors for uncharacterized chemical compounds M Bertoni, M Duran-Frigola, P Badia-i-Mompel, E Pauls, M Orozco-Ruiz, ... Nature Communications 12 (1), 3932, 2021	48	2021
A community challenge for a pancancer drug mechanism of action inference from perturbational profile data EF Douglass, RJ Allaway, B Szalai, W Wang, T Tian, A Fernández-Torras, ... Cell Reports Medicine 3 (1), 2022	39	2022
Detecting similar binding pockets to enable systems polypharmacology M Duran-Frigola, L Siragusa, E Ruppin, X Barril, G Cruciani, P Aloy PLOS Computational Biology 13 (6), e1005522, 2017	39	2017
Antigen-stimulated PBMC transcriptional protective signatures for malaria immunization G Moncunill, A Scholzen, M Mpina, A Nhabomba, AB Hounkpatin, ... Science translational medicine 12 (543), eaay8924, 2020	35	2020
Connecting chemistry and biology through molecular descriptors A Fernández-Torras, A Comajuncosa-Creus, M Duran-Frigola, P Aloy Current Opinion in Chemical Biology 66, 102090, 2022	32	2022
A chemo-centric view of human health and disease M Duran-Frigola, D Rossell, P Aloy Nature communications 5 (1), 5676, 2014	32	2014
Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque A Fernández-Torras, M Duran-Frigola, M Bertoni, M Locatelli, P Aloy Nature Communications 13 (1), 5304, 2022	31	2022
IntSide: a web server for the chemical and biological examination of drug side effects T Juan-Blanco, M Duran-Frigola, P Aloy Bioinformatics 31 (4), 612-613, 2014	31	2014
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli MA Oberhardt, R Zarecki, L Reshef, F Xia, M Duran-Frigola, R Schreiber, ... PLoS computational biology 12 (1), e1004705, 2016	29	2016
Dual fluorescence in 9-amino-2, 7, 12, 17-tetraphenylporphycene M Duran-Frigola, R Tejedor-Estrada, D Sánchez-García, S Nonell Physical Chemistry Chemical Physics 13 (21), 10326-10332, 2011	29	2011

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