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Rosa Lundbye Allesøe
Rosa Lundbye Allesøe
PhD student, Novo Nordisk foundation Center for Protein Research
Verified email at cpr.ku.dk
Title
Cited by
Cited by
Year
ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
17372020
Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial
DB Keskin, AJ Anandappa, J Sun, I Tirosh, ND Mathewson, S Li, ...
Nature 565 (7738), 234-239, 2019
10832019
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
E Zankari, R Allesøe, KG Joensen, LM Cavaco, O Lund, FM Aarestrup
Journal of Antimicrobial Chemotherapy 72 (10), 2764-2768, 2017
6002017
Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma
Z Hu, DE Leet, RL Allesøe, G Oliveira, S Li, AM Luoma, J Liu, J Forman, ...
Nature medicine 27 (3), 515-525, 2021
2942021
Improved metagenome binning and assembly using deep variational autoencoders
JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ...
Nature biotechnology 39 (5), 555-560, 2021
2522021
SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data
H Kaya, H Hasman, J Larsen, M Stegger, TB Johannesen, RL Allesøe, ...
Msphere 3 (1), 10.1128/msphere. 00612-17, 2018
213*2018
Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles
L Roer, V Tchesnokova, R Allesøe, M Muradova, S Chattopadhyay, ...
Journal of clinical microbiology 55 (8), 2538-2543, 2017
1522017
CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles
L Roer, TB Johannesen, F Hansen, M Stegger, V Tchesnokova, ...
Journal of clinical microbiology 56 (4), 10.1128/jcm. 00063-18, 2018
532018
SCCmecFinder, a web-based tool for typing of staphylococcal cassette chromosome mec in Staphylococcus aureus using whole-genome sequence data. mSphere 3: e00612-17
H Kaya, H Hasman, J Larsen, M Stegger, TB Johannesen, RL Allesøe, ...
Article PubMed PubMed Central, 2018
472018
Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders
R Nudel, ME Benros, MD Krebs, RL Allesøe, CK Lemvigh, ...
European Journal of Human Genetics 27 (9), 1445-1455, 2019
452019
RNase H–dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis
S Li, J Sun, R Allesøe, K Datta, Y Bao, G Oliveira, J Forman, R Jin, ...
Nature protocols 14 (8), 2571-2594, 2019
332019
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ...
Nature Biotechnology 41 (3), 399-408, 2023
242023
Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders–findings from a Danish population-based study
X Liu, R Nudel, WK Thompson, V Appadurai, AJ Schork, A Buil, ...
Brain, behavior, and immunity 91, 10-23, 2021
18*2021
ResFinder 4.0 for predictions of phenotypes from genotypes., 2020, 75
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
DOI: https://doi. org/10.1093/jac/dkaa345, 3491-3500, 0
16
Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots
S Nag, PE Kofoed, J Ursing, CK Lemvigh, RL Allesøe, A Rodrigues, ...
Malaria journal 17, 1-8, 2018
152018
Deep learning for cross-diagnostic prediction of mental disorder diagnosis and prognosis using Danish Nationwide register and genetic data
RL Allesøe, WK Thompson, J Bybjerg-Grauholm, DM Hougaard, ...
JAMA psychiatry 80 (2), 146-155, 2023
122023
Deep learning–based integration of genetics with registry data for stratification of schizophrenia and depression
RL Allesøe, R Nudel, WK Thompson, Y Wang, M Nordentoft, AD Børglum, ...
Science advances 8 (26), eabi7293, 2022
62022
An immunogenetic investigation of 30 autoimmune and autoinflammatory diseases and their links to psychiatric disorders in a nationwide sample
R Nudel, RL Allesøe, T Werge, WK Thompson, S Rasmussen, ME Benros
Immunology 168 (4), 622-639, 2023
52023
A large-scale investigation into the role of classical HLA loci in multiple types of severe infections, with a focus on overlaps with autoimmune and mental disorders
R Nudel, RL Allesøe, WK Thompson, T Werge, S Rasmussen, ME Benros
Journal of translational medicine 19 (1), 230, 2021
52021
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
J Ahrenfeldt, M Waisi, IC Loft, PTLC Clausen, R Allesøe, J Szarvas, ...
Scientific reports 10 (1), 3033, 2020
52020
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