James Carothers
James Carothers
Verified email at uw.edu - Homepage
Title
Cited by
Cited by
Year
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
F Zhang, JM Carothers, JD Keasling
Nature biotechnology 30 (4), 354-359, 2012
6782012
ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway
E Kopp, R Medzhitov, J Carothers, C Xiao, I Douglas, CA Janeway, ...
Genes & development 13 (16), 2059-2071, 1999
3571999
Informational complexity and functional activity of RNA structures
JM Carothers, SC Oestreich, JH Davis, JW Szostak
Journal of the American Chemical Society 126 (16), 5130-5137, 2004
2122004
Model-driven engineering of RNA devices to quantitatively program gene expression
JM Carothers, JA Goler, D Juminaga, JD Keasling
Science 334 (6063), 1716-1719, 2011
1842011
Measurement and modeling of intrinsic transcription terminators
G Cambray, JC Guimaraes, VK Mutalik, C Lam, QA Mai, T Thimmaiah, ...
Nucleic acids research 41 (9), 5139-5148, 2013
1522013
Aptamers selected for higher-affinity binding are not more specific for the target ligand
JM Carothers, SC Oestreich, JW Szostak
Journal of the American Chemical Society 128 (24), 7929-7937, 2006
1152006
Functional information and the emergence of biocomplexity
RM Hazen, PL Griffin, JM Carothers, JW Szostak
Proceedings of the National Academy of Sciences 104 (suppl 1), 8574-8581, 2007
1112007
Chemical synthesis using synthetic biology
JM Carothers, JA Goler, JD Keasling
Current opinion in biotechnology 20 (4), 498-503, 2009
1082009
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates
MW Gander, JD Vrana, WE Voje, JM Carothers, E Klavins
Nature Communications 8 (1), 1-11, 2017
932017
Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity
JM Carothers, JA Goler, Y Kapoor, L Lara, JD Keasling
Nucleic acids research 38 (8), 2736-2747, 2010
882010
Solution structure of an informationally complex high-affinity RNA aptamer to GTP
JM CAROTHERS, JH DAVIS, JJ CHOU, JW SZOSTAK
Rna 12 (4), 567-579, 2006
762006
Synthetic CRISPR-Cas gene activators for transcriptional reprogramming in bacteria
C Dong, J Fontana, A Patel, JM Carothers, JG Zalatan
Nature communications 9 (1), 1-11, 2018
682018
Data science: Accelerating innovation and discovery in chemical engineering
DAC Beck, JM Carothers, VR Subramanian, J Pfaendtner
AIChE Journal 62 (5), 1402-1416, 2016
532016
Designing RNA-based genetic control systems for efficient production from engineered metabolic pathways
JT Stevens, JM Carothers
ACS synthetic biology 4 (2), 107-115, 2015
442015
In vitro selection of RNA aptamers against a composite small molecule-protein surface
KA Plummer, JM Carothers, M Yoshimura, JW Szostak, GL Verdine
Nucleic acids research 33 (17), 5602-5610, 2005
242005
Regulated Expression of sgRNAs Tunes CRISPRi in E. coli
J Fontana, C Dong, JY Ham, JG Zalatan, JM Carothers
Biotechnology Journal 13 (9), 1800069, 2018
222018
Design-driven, multi-use research agendas to enable applied synthetic biology for global health
JM Carothers
Systems and synthetic biology 7 (3), 79-86, 2013
162013
In vitro selection of functional oligonucleotides and the origins of biochemical activity
JM Carothers, JW Szostak
The Aptamer Handbook, Functional Oligonuleotides and Their Applications, Ed …, 2006
152006
Dual-selection for evolution of in vivo functional aptazymes as riboswitch parts
JA Goler, JM Carothers, JD Keasling
Artificial Riboswitches, 221-235, 2014
122014
Effective CRISPRa-mediated control of gene expression in bacteria must overcome strict target site requirements
J Fontana, C Dong, C Kiattisewee, VP Chavali, BI Tickman, JM Carothers, ...
Nature communications 11 (1), 1-11, 2020
82020
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Articles 1–20