| Refgenie: a reference genome resource manager M Stolarczyk, VP Reuter, JP Smith, NE Magee, NC Sheffield Gigascience 9 (2), giz149, 2020 | 33 | 2020 |
| AQUA-DUCT: a ligands tracking tool T Magdziarz, K Mitusińska, S Gołdowska, A Płuciennik, M Stolarczyk, ... Bioinformatics 33 (13), 2045-2046, 2017 | 31 | 2017 |
| BALCONY: an R package for MSA and functional compartments of protein variability analysis A Płuciennik, M Stolarczyk, M Bzówka, A Raczyńska, T Magdziarz, A Góra BMC bioinformatics 19, 1-8, 2018 | 12 | 2018 |
| Linking big biomedical datasets to modular analysis with portable encapsulated projects NC Sheffield, M Stolarczyk, VP Reuter, AF Rendeiro GigaScience 10 (12), giab077, 2021 | 11 | 2021 |
| Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models MA Carey, GL Medlock, M Stolarczyk, WA Petri Jr, JL Guler, JA Papin PLoS computational biology 18 (2), e1009870, 2022 | 8 | 2022 |
| Identity and compatibility of reference genome resources M Stolarczyk, B Xue, NC Sheffield NAR Genomics and Bioinformatics 3 (2), lqab036, 2021 | 6 | 2021 |
| GenomicDistributions: fast analysis of genomic intervals with Bioconductor K Kupkova, JV Mosquera, JP Smith, M Stolarczyk, TL Danehy, JT Lawson, ... BMC genomics 23 (1), 299, 2022 | 5 | 2022 |
| Refgenie: a reference genome resource manager. GigaScience. 2020; 9 (2) M Stolarczyk, VP Reuter, JP Smith, NE Magee, NC Sheffield | 5 | |
| Expanding the Galaxy’s reference data N VijayKrishna, J Joshi, N Coraor, J Hillman-Jackson, D Bouvier, ... Bioinformatics Advances 2 (1), vbac030, 2022 | 2 | 2022 |
