Dimitris Dimitropoulos
Dimitris Dimitropoulos
Software Engineer, Google Inc.
Verified email at google.com
Title
Cited by
Cited by
Year
The RCSB Protein Data Bank: redesigned web site and web services
PW Rose, B Beran, C Bi, WF Bluhm, D Dimitropoulos, DS Goodsell, ...
Nucleic acids research 39 (suppl_1), D392-D401, 2010
5352010
The RCSB Protein Data Bank: new resources for research and education
PW Rose, C Bi, WF Bluhm, CH Christie, D Dimitropoulos, S Dutta, ...
Nucleic acids research 41 (D1), D475-D482, 2012
4162012
Remediation of the protein data bank archive
K Henrick, Z Feng, WF Bluhm, D Dimitropoulos, JF Doreleijers, S Dutta, ...
Nucleic acids research 36 (suppl_1), D426-D433, 2007
1592007
PDBe: protein data bank in Europe
S Velankar, Y Alhroub, A Alili, C Best, HC Boutselakis, S Caboche, ...
Nucleic acids research 39 (suppl_1), D402-D410, 2010
1502010
E-MSD: the European bioinformatics institute macromolecular structure database
H Boutselakis, D Dimitropoulos, J Fillon, A Golovin, K Henrick, A Hussain, ...
Nucleic acids research 31 (1), 458-462, 2003
1362003
MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites
A Golovin, D Dimitropoulos, T Oldfield, A Rachedi, K Henrick
PROTEINS: Structure, Function, and Bioinformatics 58 (1), 190-199, 2005
1142005
E‐MSD: an integrated data resource for bioinformatics
A Golovin, TJ Oldfield, JG Tate, S Velankar, GJ Barton, H Boutselakis, ...
Nucleic Acids Research 32 (suppl_1), D211-D216, 2004
962004
OneDep: unified wwPDB system for deposition, biocuration, and validation of macromolecular structures in the PDB archive
JY Young, JD Westbrook, Z Feng, R Sala, E Peisach, TJ Oldfield, S Sen, ...
Structure 25 (3), 536-545, 2017
592017
Using MSDchem to search the PDB ligand dictionary
D Dimitropoulos, J Ionides, K Henrick
Current protocols in bioinformatics 15 (1), 14.3. 1-14.3. 21, 2006
322006
Improving the representation of peptide‐like inhibitor and antibiotic molecules in the Protein Data Bank
S Dutta, D Dimitropoulos, Z Feng, I Persikova, S Sen, C Shao, ...
Biopolymers 101 (6), 659-668, 2014
232014
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
JY Young, JD Westbrook, Z Feng, E Peisach, I Persikova, R Sala, S Sen, ...
Database 2018, 2018
192018
Chemical annotation of small and peptide-like molecules at the Protein Data Bank
JY Young, Z Feng, D Dimitropoulos, R Sala, J Westbrook, M Zhuravleva, ...
Database 2013, 2013
152013
Integration of open access literature into the RCSB Protein Data Bank using BioLit
A Prlić, MA Martinez, D Dimitropoulos, B Beran, BT Yukich, PW Rose, ...
BMC bioinformatics 11 (1), 220, 2010
102010
The evolution of the RCSB Protein Data Bank website
PE Bourne, B Beran, C Bi, WF Bluhm, D Dimitropoulos, Z Feng, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 1 (5), 782-789, 2011
92011
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank
WF Bluhm, B Beran, C Bi, D Dimitropoulos, A Prlić, GB Quinn, PW Rose, ...
Database 2011, 2011
92011
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank
J Gao, A Prlić, C Bi, WF Bluhm, D Dimitropoulos, D Xu, PE Bourne, ...
Bioinformatics 33 (13), 2047-2049, 2017
82017
The European Bioinformatics Institute macromolecular structure relational database technology
H Boutselakis, D Dimitropoulos, K Henrick, J Ionides, M John, PA Keller, ...
Database Annotation in Molecular Biology, 223-240, 2004
32004
Analytical processing of the PDB on the Web: examining ligand fragments and their environment
D Dimitropoulos, K Henrick, J Swaminathan, A Golovin
WSEAS Transactions on Biology and Biomedicine 3 (6), 414, 2006
22006
The European Bioinformatics Institute Macromolecular Structure Database (E-MSD)
D Dimitropoulos, PA Keller, K Henrick, J Ionides, E Krissinel, P McNeil, ...
Protein Structure, 411-419, 2003
12003
PDBx/mmCIF: the foundation for the wwPDB onedep system
J Young, JD Westbrook, Z Feng, R Sala, E Peisach, TJ Oldfield, S Sen, ...
Foundations of Crystallography 70, C1361, 2017
2017
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