| 3D genomics across the tree of life reveals condensin II as a determinant of architecture type C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ... Science 372 (6545), 984-989, 2021 | 147 | 2021 |
| Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures S Brahmachari, JF Marko Proceedings of the National Academy of Sciences 116 (50), 24956-24965, 2019 | 45 | 2019 |
| Supercoiling DNA locates mismatches A Dittmore, S Brahmachari, Y Takagi, JF Marko, KC Neuman Physical review letters 119 (14), 147801, 2017 | 28 | 2017 |
| Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion S Brahmachari, VG Contessoto, M Di Pierro, JN Onuchic Nucleic Acids Research 50 (8), 4258-4271, 2022 | 26 | 2022 |
| Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches PR Desai, S Brahmachari, JF Marko, S Das, KC Neuman Nucleic acids research 48 (19), 10713-10725, 2020 | 21 | 2020 |
| DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases S Tripathi, S Brahmachari, JN Onuchic, H Levine Nucleic acids research 50 (3), 1269-1279, 2022 | 18 | 2022 |
| Torque and buckling in stretched intertwined double-helix DNAs S Brahmachari, JF Marko Physical Review E 95 (5), 052401, 2017 | 16 | 2017 |
| Defect-facilitated buckling in supercoiled double-helix DNA S Brahmachari, A Dittmore, Y Takagi, KC Neuman, JF Marko Physical Review E 97 (2), 022416, 2018 | 13 | 2018 |
| DNA mechanics and topology S Brahmachari, JF Marko Biomechanics in Oncology, 11-39, 2018 | 9 | 2018 |
| Nucleation of multiple buckled structures in intertwined DNA double helices S Brahmachari, KH Gunn, RD Giuntoli, A Mondragón, JF Marko Physical review letters 119 (18), 188103, 2017 | 8 | 2017 |
| PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ... Journal of Molecular Biology 435 (15), 168180, 2023 | 3 | 2023 |
| Structural reorganization and relaxation dynamics of axially stressed chromosomes BS Ruben, S Brahmachari, VG Contessoto, RR Cheng, ABO Junior, ... Biophysical Journal 122 (9), 1633-1645, 2023 | 3 | 2023 |
| Temporally correlated active forces drive chromosome structure and dynamics S Brahmachari, T Markovich, FC MacKintosh, JN Onuchic bioRxiv, 2023.04. 23.528410, 2023 | 2 | 2023 |
| Regulation of chromatin transcription via DNA supercoiling S Brahmachari, S Tripathi, J Onuchic, H Levine Bulletin of the American Physical Society, 2024 | | 2024 |
| Investigating human chromosome organization by whole-genome simulations MF Mello, AB Oliveira, E Dodero-Rojas, S Brahmachari, VG Contessoto, ... Biophysical Journal 123 (3), 366a, 2024 | | 2024 |
| Exploring Mechanisms Driving Chromosomal Structural Features across the Tree of Life S Brahmachari PAG Australia 2023, 2023 | | 2023 |
| Regulation of chromatin transcription dynamics by DNA supercoiling S Brahmachari, S Tripathi, JN Onuchic, H Levine bioRxiv, 2023.11. 06.565891, 2023 | | 2023 |
| Physical Modeling of the Three-Dimensional Architecture of the Human Genome J Onuchic, S Brahmachari APS March Meeting Abstracts 2023, N13. 004, 2023 | | 2023 |
| Structural and Dynamic signatures of active chromatin polymers S Brahmachari, T Markovich, F Mackintosh, J Onuchic APS March Meeting Abstracts 2023, M08. 009, 2023 | | 2023 |
| DNA supercoiling-transcription interplay in the presence of nucleosomes S Tripathi, S Brahmachari, J Onuchic, H Levine APS March Meeting Abstracts 2023, F06. 004, 2023 | | 2023 |
John F. MarkoProfessor, Molecular Biosciences and Physics & Astronomy, Northwestern UniversityVerified email at northwestern.edu
