| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... elife 10, e65088, 2021 | 1391 | 2021 |
| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1356 | 2019 |
| Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019 | 1009 | 2019 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 778 | 2019 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 521 | 2020 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 481 | 2023 |
| Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023-1024, 2017 | 416 | 2017 |
| The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell host & microbe 26 (5), 666-679. e7, 2019 | 380 | 2019 |
| Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ... Nature Medicine 28 (3), 535-544, 2022 | 270 | 2022 |
| The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature 614 (7946), 125-135, 2023 | 242 | 2023 |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine 28 (9), 1913-1923, 2022 | 173 | 2022 |
| Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome biology 22 (1), 209, 2021 | 103 | 2021 |
| Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ... Genome biology 21, 1-27, 2020 | 99 | 2020 |
| Detecting contamination in viromes using ViromeQC M Zolfo, F Pinto, F Asnicar, P Manghi, A Tett, FD Bushman, N Segata Nature biotechnology 37 (12), 1408-1412, 2019 | 96 | 2019 |
| Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics P Ghensi, P Manghi, M Zolfo, F Armanini, E Pasolli, M Bolzan, A Bertelle, ... npj Biofilms and Microbiomes 6 (1), 47, 2020 | 95 | 2020 |
| A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche M Zepeda-Rivera, SS Minot, H Bouzek, H Wu, A Blanco-Míguez, ... Nature 628 (8007), 424-432, 2024 | 79 | 2024 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nat Commun 11: 2500 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... | 67 | 2020 |
| Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, A Realis Luc, ... Msystems 4 (5), 10.1128/msystems. 00289-19, 2019 | 67 | 2019 |
| Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ... Genome biology 20, 1-16, 2019 | 63 | 2019 |
| Profiling microbial strains in urban environments using metagenomic sequencing data M Zolfo, F Asnicar, P Manghi, E Pasolli, A Tett, N Segata Biology direct 13, 1-13, 2018 | 41 | 2018 |
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
