Pavel Baranov, "Pasha"
Pavel Baranov, "Pasha"
Professor of Biomolecular Informatics, University College Cork, Ireland
Verified email at - Homepage
Cited by
Cited by
Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression
DE Andreev, PBF O'Connor, C Fahey, EM Kenny, IM Terenin, SE Dmitriev, ...
elife 4, e03971, 2015
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
JF Atkins, G Loughran, PR Bhatt, AE Firth, PV Baranov
Nucleic acids research 44 (15), 7007-7078, 2016
Recoding: translational bifurcations in gene expression
PV Baranov, RF Gesteland, JF Atkins
Gene 286 (2), 187-201, 2002
Programmed ribosomal frameshifting in decoding the SARS-CoV genome
PV Baranov, CM Henderson, CB Anderson, RF Gesteland, JF Atkins, ...
Virology 332 (2), 498-510, 2005
DARNED: a DAtabase of RNa EDiting in humans
A Kiran, PV Baranov
Bioinformatics 26 (14), 1772-1776, 2010
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov
Nucleic acids research 39 (10), 4220-4234, 2011
Evidence of efficient stop codon readthrough in four mammalian genes
G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ...
Nucleic acids research 42 (14), 8928-8938, 2014
Observation of dually decoded regions of the human genome using ribosome profiling data
AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov
Genome research 22 (11), 2219-2229, 2012
GWIPS-viz: development of a ribo-seq genome browser
AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ...
Nucleic acids research 42 (D1), D859-D864, 2014
Pyrrolysine and selenocysteine use dissimilar decoding strategies
Y Zhang, PV Baranov, JF Atkins, VN Gladyshev
Journal of Biological Chemistry 280 (21), 20740-20751, 2005
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
DE Andreev, PBF O'Connor, G Loughran, SE Dmitriev, PV Baranov, ...
Nucleic acids research 45 (2), 513-526, 2017
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes
DE Andreev, PBF O’Connor, AV Zhdanov, RI Dmitriev, IN Shatsky, ...
Genome biology 16, 1-14, 2015
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome
S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ...
Molecular cell 74 (3), 481-493. e6, 2019
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
PBF O’Connor, DE Andreev, PV Baranov
Nature communications 7 (1), 12915, 2016
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Ň resolution
F Mueller, I Sommer, P Baranov, R Matadeen, M Stoldt, J Wo»hnert, ...
Journal of molecular biology 298 (1), 35-59, 2000
Darned in 2013: inclusion of model organisms and linking with Wikipedia
AM Kiran, JJ O'Mahony, K Sanjeev, PV Baranov
Nucleic acids research 41 (D1), D258-D261, 2012
P-site tRNA is a crucial initiator of ribosomal frameshifting
PV Baranov, RF Gesteland, JF Atkins
Rna 10 (2), 221-230, 2004
Release factor 2 frameshifting sites in different bacteria
PV Baranov, RF Gesteland, JF Atkins
EMBO reports 3 (4), 373-377, 2002
Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale
AM Michel, PV Baranov
Wiley Interdisciplinary Reviews: RNA 4 (5), 473-490, 2013
Translational recoding signals between gag and pol in diverse LTR retrotransposons
X Gao, ER Havecker, PV Baranov, JF Atkins, DF Voytas
Rna 9 (12), 1422-1430, 2003
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