| Single-cell map of diverse immune phenotypes in the breast tumor microenvironment E Azizi, AJ Carr, G Plitas, AE Cornish, C Konopacki, S Prabhakaran, ... Cell 174 (5), 1293-1308. e36, 2018 | 1792 | 2018 |
| Research in Computational Molecular Biology O Zagordi, A Töpfer, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Springer Berlin Heidelberg, 2012 | 183* | 2012 |
| Probabilistic inference of viral quasispecies subject to recombination A Töpfer, O Zagordi, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Journal of Computational Biology 20 (2), 113-123, 2013 | 161 | 2013 |
| Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ... Nucleic acids research 42 (14), e115-e115, 2014 | 152 | 2014 |
| Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data. S Prabhakaran, E Azizi, A Carr, D Pe'er ICML, 1070-1079, 2016 | 135 | 2016 |
| Ovarian cancer immunogenicity is governed by a narrow subset of progenitor tissue-resident memory T cells CM Anadon, X Yu, K Hänggi, S Biswas, RA Chaurio, A Martin, KK Payne, ... Cancer Cell 40 (5), 545-557. e13, 2022 | 111 | 2022 |
| HIV haplotype inference using a propagating dirichlet process mixture model S Prabhakaran, M Rey, O Zagordi, N Beerenwinkel, V Roth IEEE/ACM transactions on computational biology and bioinformatics 11 (1 …, 2014 | 109 | 2014 |
| Bayesian Inference for Single-cell Clustering and Imputing E Azizi, S Prabhakaran, A Carr, D Pe'er Genomics and Computational Biology 3 (1), 46, 2017 | 44 | 2017 |
| IgA-Dominated Humoral Immune Responses Govern Patients' Outcome in Endometrial Cancer G Mandal, S Biswas, CM Anadon, X Yu, CD Gatenbee, S Prabhakaran, ... Cancer Research 82 (5), 859-871, 2022 | 42 | 2022 |
| IgA-dominated humoral immune responses govern patients' outcome in endometrial cancer G Mandal, S Biswas, CM Anadon, X Yu, CD Gatenbee, S Prabhakaran, ... Cancer Research 82 (5), 859-871, 2022 | 42 | 2022 |
| Virtual alignment of pathology image series for multi-gigapixel whole slide images CD Gatenbee, AM Baker, S Prabhakaran, O Swinyard, RJC Slebos, ... Nature Communications 14 (1), 4502, 2023 | 39 | 2023 |
| HIV haplotype inference using a constraint-based Dirichlet process mixture model S Prabhakaran, M Rey, O Zagordi, N Beerenwinkel, V Roth Machine Learning in Computational Biology (MLCB) NIPS Workshop, 1-4, 2010 | 32 | 2010 |
| Sparcle: assigning transcripts to cells in multiplexed images S Prabhakaran Bioinformatics advances 2 (1), vbac048, 2022 | 26 | 2022 |
| Sparcle: assigning transcripts to cells in multiplexed images S Prabhakaran Bioinformatics Advances 2 (1), vbac048, 2022 | 26 | 2022 |
| The translation-invariant Wishart-Dirichlet process for clustering distance data JE Vogt, S Prabhakaran, TJ Fuchs, V Roth Proceedings of the 27th International Conference on Machine Learning (ICML …, 2010 | 25 | 2010 |
| Probabilistic inference of viral quasispecies subject to recombination O Zagordi, A Töpfer, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Research in Computational Molecular Biology, 342-354, 2012 | 23 | 2012 |
| Probabilistic inference of viral quasispecies subject to recombination O Zagordi, A Töpfer, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Research in Computational Molecular Biology, 342-354, 2012 | 23 | 2012 |
| A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks C Burdziak, E Azizi, S Prabhakaran, D Pe'er arXiv preprint arXiv:1902.08138, 2019 | 18 | 2019 |
| Automatic model selection in archetype analysis S Prabhakaran, S Raman, JE Vogt, V Roth Pattern Recognition, 458-467, 2012 | 16 | 2012 |
| VALIS: Virtual Alignment of pathoLogy Image Series CD Gatenbee, AM Baker, S Prabhakaran, RJC Slebos, G Mandal, ... bioRxiv, 2021.11. 09.467917, 2021 | 7 | 2021 |
Elham AziziColumbia UniversityVerified email at columbia.edu
