| Skyline: an open source document editor for creating and analyzing targeted proteomics experiments B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ... Bioinformatics 26 (7), 966-968, 2010 | 4741 | 2010 |
| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature biotechnology 30 (10), 918-920, 2012 | 3433 | 2012 |
| A proteomic view of the Plasmodium falciparum life cycle L Florens, MP Washburn, JD Raine, RM Anthony, M Grainger, JD Haynes, ... Nature 419 (6906), 520-526, 2002 | 1678 | 2002 |
| DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics DL Tabb, WH McDonald, JR Yates Journal of proteome research 1 (1), 21-26, 2002 | 1621 | 2002 |
| Proteogenomic characterization of human colon and rectal cancer B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ... Nature 513 (7518), 382-387, 2014 | 1441 | 2014 |
| Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ... Nature biotechnology 27 (7), 633-641, 2009 | 1164 | 2009 |
| Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 952 | 2016 |
| MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis DL Tabb, CG Fernando, MC Chambers Journal of proteome research 6 (2), 654-661, 2007 | 649 | 2007 |
| Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ... Journal of proteome research 9 (2), 761-776, 2010 | 647 | 2010 |
| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 619 | 2019 |
| Proteomic parsimony through bipartite graph analysis improves accuracy and transparency B Zhang, MC Chambers, DL Tabb Journal of proteome research 6 (9), 3549-3557, 2007 | 405 | 2007 |
| IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering ZQ Ma, S Dasari, MC Chambers, MD Litton, SM Sobecki, LJ Zimmerman, ... Journal of proteome research 8 (8), 3872-3881, 2009 | 396 | 2009 |
| GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model DL Tabb, A Saraf, JR Yates Analytical chemistry 75 (23), 6415-6421, 2003 | 396 | 2003 |
| MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ... Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004 | 395 | 2004 |
| Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra LA Breci, DL Tabb, JR Yates, VH Wysocki Analytical chemistry 75 (9), 1963-1971, 2003 | 383 | 2003 |
| Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 361 | 2020 |
| Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides DL Tabb, LL Smith, LA Breci, VH Wysocki, D Lin, JR Yates Analytical chemistry 75 (5), 1155-1163, 2003 | 321 | 2003 |
| Employing ProteoWizard to convert raw mass spectrometry data JD Holman, DL Tabb, P Mallick Current protocols in bioinformatics 46 (1), 13.24. 1-13.24. 9, 2014 | 308 | 2014 |
| Large-scale protein identification using mass spectrometry D Lin, DL Tabb, JR Yates III Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1646 (1-2), 1-10, 2003 | 298 | 2003 |
| The enterocyte microvillus is a vesicle-generating organelle RE McConnell, JN Higginbotham, DA Shifrin Jr, DL Tabb, RJ Coffey, ... Journal of Cell Biology 185 (7), 1285-1298, 2009 | 286 | 2009 |
John YatesErnest W. Hahn Professor @ The Scripps Research InstituteVerified email at scripps.edu
