Anton Nekrutenko
Anton Nekrutenko
Penn State University
Verified email at - Homepage
Cited by
Cited by
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
J Goecks, A Nekrutenko, J Taylor, Galaxy Team team@ galaxyproject. org
Genome biology 11, 1-13, 2010
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1
Nature 432 (7018), 695-716, 2004
Galaxy: a platform for interactive large-scale genome analysis
B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ...
Genome research 15 (10), 1451-1455, 2005
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ...
Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010
Ten simple rules for reproducible computational research
GK Sandve, A Nekrutenko, J Taylor, E Hovig
PLoS computational biology 9 (10), e1003285, 2013
Manipulation of FASTQ data with Galaxy
D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ...
Bioinformatics 26 (14), 1783-1785, 2010
Evolutionary analyses of the human genome
WH Li, Z Gu, H Wang, A Nekrutenko
Nature 409 (6822), 847-849, 2001
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
Transposable elements are found in a large number of human protein-coding genes
A Nekrutenko, WH Li
TRENDS in Genetics 17 (11), 619-621, 2001
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
Next-generation sequencing data interpretation: enhancing reproducibility and accessibility
A Nekrutenko, J Taylor
Nature Reviews Genetics 13 (9), 667-672, 2012
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
The KA/KS ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study
A Nekrutenko, KD Makova, WH Li
Genome research 12 (1), 198-202, 2002
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
Sequencing error profiles of Illumina sequencing instruments
N Stoler, A Nekrutenko
NAR genomics and bioinformatics 3 (1), lqab019, 2021
Comparative genomics
W Miller, KD Makova, A Nekrutenko, RC Hardison
Annu. Rev. Genomics Hum. Genet. 5, 15-56, 2004
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15, 1-3, 2014
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ...
Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014
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