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Sofia Robb
Sofia Robb
Verified email at stowers.org
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Year
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes
BL Cantarel, I Korf, SMC Robb, G Parra, E Ross, B Moore, C Holt, ...
Genome research 18 (1), 188-196, 2008
19452008
SmedGD: the Schmidtea mediterranea genome database
SMC Robb, E Ross, AS Alvarado
Nucleic acids research 36 (suppl_1), D599-D606, 2007
3512007
The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration
AS Alvarado, PA Newmark, SMC Robb, R Juste
Oxford University Press for The Company of Biologists Limited 129 (24), 5659 …, 2002
3092002
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
JJ Smith, N Timoshevskaya, C Ye, C Holt, MC Keinath, HJ Parker, ...
Nature genetics 50 (2), 270-277, 2018
2912018
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ...
Nucleic acids research 48 (D1), D704-D715, 2020
2342020
Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates
W Wang, CK Hu, A Zeng, D Alegre, D Hu, K Gotting, A Ortega Granillo, ...
Science 369 (6508), eaaz3090, 2020
1712020
SmedGD 2.0: The Schmidtea mediterranea genome database
SMC Robb, K Gotting, E Ross, A Sánchez Alvarado
genesis 53 (8), 535-546, 2015
1392015
Phylogenetic and Phylogenomic Definition of Rhizopus Species
AP Gryganskyi, J Golan, S Dolatabadi, S Mondo, S Robb, A Idnurm, ...
G3: Genes, Genomes, Genetics 8 (6), 2007-2018, 2018
882018
Embryonic origin of adult stem cells required for tissue homeostasis and regeneration
EL Davies, K Lei, CW Seidel, AE Kroesen, SA McKinney, L Guo, ...
Elife 6, e21052, 2017
842017
The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice
SMC Robb, L Lu, E Valencia, JM Burnette III, Y Okumoto, SR Wessler, ...
G3: Genes, Genomes, Genetics 3 (6), 949-957, 2013
582013
Sea anemone genomes reveal ancestral metazoan chromosomal macrosynteny
B Zimmermann, JD Montenegro, SMC Robb, WJ Fropf, L Weilguny, S He, ...
BioRxiv, 2020.10. 30.359448, 2020
522020
Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea
LC Cheng, KC Tu, CW Seidel, SMC Robb, F Guo, AS Alvarado
Developmental biology 433 (2), 357-373, 2018
482018
Identification of immunological reagents for use in the study of freshwater planarians by means of whole‐mount immunofluorescence and confocal microscopy
SMC Robb, AS Alvarado
genesis 32 (4), 293-298, 2002
462002
Tracking the genome-wide outcomes of a transposable element burst over decades of amplification
L Lu, J Chen, SMC Robb, Y Okumoto, JE Stajich, SR Wessler
Proceedings of the National Academy of Sciences 114 (49), E10550-E10559, 2017
442017
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies
N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff, S Carbon, ...
Database 2022, baac087, 2022
432022
Histone modifications and regeneration in the planarian Schmidtea mediterranea
SMC Robb, AS Alvarado
Current topics in developmental biology 108, 71-93, 2014
342014
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population
J Chen, L Lu, SMC Robb, M Collin, Y Okumoto, JE Stajich, SR Wessler
Proceedings of the National Academy of Sciences 117 (42), 26288-26297, 2020
322020
Managing biological databases
A Sanchez, S Robb
US Patent 8,108,384, 2012
322012
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes
N Timoshevskaya, Kİ Eşkut, VA Timoshevskiy, SMC Robb, C Holt, ...
Cell reports 42 (3), 2023
252023
Hands-on classroom activities for exploring regeneration and stem cell biology with planarians
A Accorsi, MM Williams, EJ Ross, SMC Robb, SA Elliott, KC Tu, ...
The American Biology Teacher 79 (3), 208-223, 2017
232017
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