Zhi John Lu
Zhi John Lu
Associate Professor, Tsinghua University
Verified email at - Homepage
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature, 2012
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
Divergent lncRNAs regulate gene expression and lineage differentiation in pluripotent cells
S Luo, JY Lu, L Liu, Y Yin, C Chen, X Han, B Wu, R Xu, W Liu, P Yan, ...
Cell stem cell 18 (5), 637-652, 2016
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
Characterization of Stress‐responsive lncRNAs in Arabidopsis thaliana by Integrating Expression, Epigenetic and Structural Features
C Di, J Yuan, Y Wu, J Li, H Lin, L Hu, T Zhang, Y Qi, MB Gerstein, Y Guo, ...
The Plant Journal, 2014
Recurrently deregulated lncRNAs in hepatocellular carcinoma
Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ...
Nature communications 8 (1), 14421, 2017
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Chen, ...
Genome research 21 (2), 245-254, 2011
Improved RNA secondary structure prediction by maximizing expected pair accuracy
ZJ Lu, JW Gloor, DH Mathews
Rna 15 (10), 1805-1813, 2009
Pervasive chromatin-RNA binding protein interactions enable RNA-based regulation of transcription
R Xiao, JY Chen, Z Liang, D Luo, G Chen, ZJ Lu, Y Chen, B Zhou, H Li, ...
Cell 178 (1), 107-121. e18, 2019
CLIPdb: a CLIP-seq database for protein-RNA interactions
YCT Yang, C Di, B Hu, M Zhou, Y Liu, N Song, Y Li, J Umetsu, ZJ Lu
BMC genomics 16, 1-8, 2015
Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response
M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ...
PLoS genetics 6 (2), e1000848, 2010
Microarray is an efficient tool for circRNA profiling
S Li, S Teng, J Xu, G Su, Y Zhang, J Zhao, S Zhang, H Wang, W Qin, ...
Briefings in bioinformatics 20 (4), 1420-1433, 2019
Efficient siRNA selection using hybridization thermodynamics
ZJ Lu, DH Mathews
Nucleic acids research 36 (2), 640-647, 2008
Critical roles of long noncoding RNAs in Drosophila spermatogenesis
K Wen, L Yang, T Xiong, C Di, D Ma, M Wu, Z Xue, X Zhang, L Li, ...
Genome Research 26 (9), 1233-1244, 2016
A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
ZJ Lu, DH Turner, DH Mathews
Nucleic acids research 34 (17), 4912-4924, 2006
POSTAR2: deciphering the post-transcriptional regulatory logics
Y Zhu, G Xu, YT Yang, Z Xu, X Chen, B Shi, D Xie, ZJ Lu, P Wang
Nucleic acids research 47 (D1), D203-D211, 2019
RNA biomarkers: frontier of precision medicine for cancer
X Xi, T Li, Y Huang, J Sun, Y Zhu, Y Yang, ZJ Lu
Non-coding RNA 3 (1), 9, 2017
Systematic identification of synergistic drug pairs targeting HIV
X Tan, L Hu, LJ Luquette III, G Gao, Y Liu, H Qu, R Xi, ZJ Lu, PJ Park, ...
Nature Biotechnology, 2012
COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features
L Hu, Z Xu, B Hu, ZJ Lu
Nucleic acids research 45 (1), e2-e2, 2017
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