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Tomer Shlomi
Tomer Shlomi
Professor of Computer Science and Biology, Technion
Verified email at cs.technion.ac.il
Title
Cited by
Cited by
Year
Quantitative flux analysis reveals folate-dependent NADPH production
J Fan, J Ye, JJ Kamphorst, T Shlomi, CB Thompson, JD Rabinowitz
Nature 510 (7504), 298-302, 2014
9032014
Associating genes and protein complexes with disease via network propagation
O Vanunu, O Magger, E Ruppin, T Shlomi, R Sharan
PLoS computational biology 6 (1), e1000641, 2010
8712010
Network-based prediction of human tissue-specific metabolism
T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin
Nature biotechnology 26 (9), 1003-1010, 2008
7052008
Regulatory on/off minimization of metabolic flux changes after genetic perturbations
T Shlomi, O Berkman, E Ruppin
Proceedings of the national academy of sciences 102 (21), 7695-7700, 2005
5622005
A key role for mitochondrial gatekeeper pyruvate dehydrogenase in oncogene-induced senescence
J Kaplon, L Zheng, K Meissl, B Chaneton, VA Selivanov, G Mackay, ...
Nature 498 (7452), 109-112, 2013
5512013
Predicting selective drug targets in cancer through metabolic networks
O Folger, L Jerby, C Frezza, E Gottlieb, E Ruppin, T Shlomi
Molecular systems biology 7 (1), 501, 2011
5442011
Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase
C Frezza, L Zheng, O Folger, KN Rajagopalan, ED MacKenzie, L Jerby, ...
Nature 477 (7363), 225-228, 2011
5022011
Computational reconstruction of tissue‐specific metabolic models: application to human liver metabolism
L Jerby, T Shlomi, E Ruppin
Molecular systems biology 6 (1), 401, 2010
4122010
Glutamine‐driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia
J Fan, JJ Kamphorst, R Mathew, MK Chung, E White, T Shlomi, ...
Molecular systems biology 9 (1), 712, 2013
3732013
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
JO Park, SA Rubin, YF Xu, D Amador-Noguez, J Fan, T Shlomi, ...
Nature chemical biology 12 (7), 482-489, 2016
3012016
A genome‐scale computational study of the interplay between transcriptional regulation and metabolism
T Shlomi, Y Eisenberg, R Sharan, E Ruppin
Molecular systems biology 3 (1), 101, 2007
2912007
Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
S Mintz-Oron, S Meir, S Malitsky, E Ruppin, A Aharoni, T Shlomi
Proceedings of the National Academy of Sciences 109 (1), 339-344, 2012
2782012
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
K Yizhak, T Benyamini, W Liebermeister, E Ruppin, T Shlomi
Bioinformatics 26 (12), i255-i260, 2010
2782010
iMAT: an integrative metabolic analysis tool
H Zur, E Ruppin, T Shlomi
Bioinformatics 26 (24), 3140-3142, 2010
2692010
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
N Tepper, T Shlomi
Bioinformatics 26 (4), 536-543, 2010
2542010
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
T Shlomi, T Benyamini, E Gottlieb, R Sharan, E Ruppin
PLoS computational biology 7 (3), e1002018, 2011
2432011
Transfer of miRNA in Macrophage-Derived Exosomes Induces Drug Resistance in Pancreatic AdenocarcinomaExosomes Induce Gemcitabine Resistance in Pancreatic Cancer
Y Binenbaum, E Fridman, Z Yaari, N Milman, A Schroeder, G Ben David, ...
Cancer research 78 (18), 5287-5299, 2018
2222018
QPath: a method for querying pathways in a protein-protein interaction network
T Shlomi, D Segal, E Ruppin, R Sharan
BMC bioinformatics 7 (1), 1-9, 2006
2172006
Predicting metabolic biomarkers of human inborn errors of metabolism
T Shlomi, MN Cabili, E Ruppin
Molecular systems biology 5 (1), 263, 2009
1912009
Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements
D Davidi, E Noor, W Liebermeister, A Bar-Even, A Flamholz, K Tummler, ...
Proceedings of the National Academy of Sciences 113 (12), 3401-3406, 2016
1822016
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