Patrick Flaherty
Title
Cited by
Cited by
Year
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ...
nature 418 (6896), 387-391, 2002
41422002
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast
G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ...
Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004
5052004
Oncogenic BRAF mutation with CDKN2A inactivation is characteristic of a subset of pediatric malignant astrocytomas
JD Schiffman, JG Hodgson, SR VandenBerg, P Flaherty, MYC Polley, ...
Cancer research 70 (2), 512-519, 2010
2382010
Phase II study of gemcitabine, carboplatin, and iniparib as neoadjuvant therapy for triple-negative and BRCA1/2 mutation–associated breast cancer with assessment of a tumor …
ML Telli, KC Jensen, S Vinayak, AW Kurian, JA Lipson, PJ Flaherty, ...
Journal of Clinical Oncology 33 (17), 1895, 2015
1732015
Genome-wide requirements for resistance to functionally distinct DNA-damaging agents
W Lee, RPS Onge, M Proctor, P Flaherty, MI Jordan, AP Arkin, RW Davis, ...
PLoS Genet 1 (2), e24, 2005
1672005
Ultrasensitive detection of rare mutations using next-generation targeted resequencing
P Flaherty, G Natsoulis, O Muralidharan, M Winters, J Buenrostro, J Bell, ...
Nucleic Acids Research, 2011
1362011
Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer
LD Nadauld, S Garcia, G Natsoulis, JM Bell, L Miotke, ES Hopmans, H Xu, ...
Genome Biology 15 (428), 2014
822014
A latent variable model for chemogenomic profiling
P Flaherty, G Giaever, J Kumm, MI Jordan, AP Arkin
Bioinformatics 21 (15), 3286-3293, 2005
802005
Robust design of biological experiments
P Flaherty, A Arkin, MI Jordan
Advances in neural information processing systems, 363-370, 2006
702006
Identification of a new class of antifungals targeting the synthesis of fungal sphingolipids
V Mor, A Rella, AM Farnoud, A Singh, M Munshi, A Bryan, S Naseem, ...
MBio 6 (3), 2015
582015
Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis
HJ Lee, P Flaherty, HP Ji
BMC medical genomics 6 (1), 54, 2013
432013
A dual receptor crosstalk model of G-protein-coupled signal transduction
P Flaherty, ML Radhakrishnan, T Dinh, RA Rebres, TI Roach, MI Jordan, ...
PLoS computational biology 4 (9), e1000185, 2008
432008
Prediction of multiple infections after severe burn trauma: a prospective cohort study
S Yan, A Tsurumi, YA Que, CM Ryan, A Bandyopadhaya, AA Morgan, ...
Annals of surgery 261 (4), 781, 2015
302015
GLAD: a mixed-membership model for heterogeneous tumor subtype classification
H Saddiki, J McAuliffe, P Flaherty
Bioinformatics 31 (2), 225-232, 2015
132015
GEMINI: a computationally-efficient search engine for large gene expression datasets
T DeFreitas, H Saddiki, P Flaherty
BMC bioinformatics 17 (1), 102, 2016
112016
Conditional genetic screen in Physcomitrella patens reveals a novel microtubule depolymerizing-end-tracking protein
X Ding, LM Pervere, C Bascom Jr, JP Bibeau, S Khurana, AM Butt, RG Orr, ...
PLoS genetics 14 (5), e1007221, 2018
92018
RVD: a command-line program for ultrasensitive rare single nucleotide variant detection using targeted next-generation DNA resequencing
A Cushing, P Flaherty, E Hopmans, JM Bell, HP Ji
BMC research notes 6 (1), 206, 2013
72013
Reverse chemical genetics: comprehensive fitness profiling reveals the spectrum of drug target interactions
LH Wong, S Sinha, JR Bergeron, JC Mellor, G Giaever, P Flaherty, ...
PLoS genetics 12 (9), e1006275, 2016
62016
RVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data
Y He, F Zhang, P Flaherty
Bioinformatics 31 (17), 2785-2793, 2015
62015
Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data
F Zhang, P Flaherty
BMC bioinformatics 18 (1), 45, 2017
42017
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Articles 1–20