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David LeBard
David LeBard
Head of Enhanced Sampling, OpenEye Scientific Software Inc.
Verified email at eyesopen.com - Homepage
Title
Cited by
Cited by
Year
Self-assembly of coarse-grained ionic surfactants accelerated by graphics processing units
DN LeBard, BG Levine, P Mertmann, SA Barr, A Jusufi, S Sanders, ...
Soft Matter 8 (8), 2385-2397, 2012
1562012
Multiple binding sites for the general anesthetic isoflurane identified in the nicotinic acetylcholine receptor transmembrane domain
G Brannigan, DN LeBard, J Hénin, RG Eckenhoff, ML Klein
Proceedings of the National Academy of Sciences 107 (32), 14122-14127, 2010
1412010
Accurate modeling of scaffold hopping transformations in drug discovery
L Wang, Y Deng, Y Wu, B Kim, DN LeBard, D Wandschneider, M Beachy, ...
Journal of chemical theory and computation 13 (1), 42-54, 2017
1212017
Solvent reorganization energy of charge transfer in DNA hairpins
DN LeBard, M Lilichenko, DV Matyushov, YA Berlin, MA Ratner
The Journal of Physical Chemistry B 107 (51), 14509-14520, 2003
932003
Protein–water electrostatics and principles of bioenergetics
DN LeBard, DV Matyushov
Physical Chemistry Chemical Physics 12 (47), 15335-15348, 2010
892010
Exploring volatile general anesthetic binding to a closed membrane-bound bacterial voltage-gated sodium channel via computation
SG Raju, AF Barber, DN LeBard, ML Klein, V Carnevale
PLoS computational biology 9 (6), e1003090, 2013
882013
Micellization studied by GPU-accelerated coarse-grained molecular dynamics
BG Levine, DN LeBard, R DeVane, W Shinoda, A Kohlmeyer, ML Klein
Journal of Chemical Theory and Computation 7 (12), 4135-4145, 2011
842011
General anesthetics predicted to block the GLIC pore with micromolar affinity
DN LeBard, J Hénin, RG Eckenhoff, ML Klein, G Brannigan
PLoS computational biology 8 (5), e1002532, 2012
722012
Ferroelectric hydration shells around proteins: electrostatics of the protein− water interface
DN LeBard, DV Matyushov
The Journal of Physical Chemistry B 114 (28), 9246-9258, 2010
642010
Energetics and kinetics of primary charge separation in bacterial photosynthesis
DN LeBard, V Kapko, DV Matyushov
The Journal of Physical Chemistry B 112 (33), 10322-10342, 2008
632008
TCR triggering by pMHC ligands tethered on surfaces via poly (ethylene glycol) depends on polymer length
Z Ma, DN LeBard, SM Loverde, KA Sharp, ML Klein, DE Discher, ...
PloS one 9 (11), e112292, 2014
602014
Premicelles and monomer exchange in aqueous surfactant solutions above and below the critical micelle concentration
DN LeBard, BG Levine, R DeVane, W Shinoda, ML Klein
Chemical Physics Letters 522, 38-42, 2012
592012
Glassy protein dynamics and gigantic solvent reorganization energy of plastocyanin
DN LeBard, DV Matyushov
The Journal of Physical Chemistry B 112 (16), 5218-5227, 2008
482008
Surfactant concentration effects on micellar properties
A Jusufi, DN LeBard, BG Levine, ML Klein
The Journal of Physical Chemistry B 116 (3), 987-991, 2012
432012
Energetics of bacterial photosynthesis
DN LeBard, DV Matyushov
The Journal of Physical Chemistry B 113 (36), 12424-12437, 2009
432009
WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications
JD Russo, S Zhang, JMG Leung, AT Bogetti, JP Thompson, AJ DeGrave, ...
Journal of Chemical Theory and Computation 18 (2), 638-649, 2022
342022
Protein dynamics to optimize and control bacterial photosynthesis
DN LeBard, DR Martin, S Lin, NW Woodbury, DV Matyushov
Chemical Science 4 (11), 4127-4136, 2013
302013
Dynamical transition, hydrophobic interface, and the temperature dependence of electrostatic fluctuations in proteins
DN LeBard, DV Matyushov
Physical Review E 78 (6), 061901, 2008
272008
Redox entropy of plastocyanin: Developing a microscopic view of mesoscopic polar solvation
DN LeBard, DV Matyushov
The Journal of Chemical Physics 128 (15), 2008
272008
Magnesium-dependent RNA binding to the PA endonuclease domain of the avian influenza polymerase
S Xiao, ML Klein, DN LeBard, BG Levine, H Liang, CM MacDermaid, ...
The journal of physical chemistry B 118 (4), 873-889, 2014
252014
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Articles 1–20