Yucheng T. Yang
Yucheng T. Yang
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Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), eaat8127, 2018
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), eaat8464, 2018
A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ...
Nucleic acids research 49 (D1), D916-D923, 2021
Recurrently deregulated lncRNAs in hepatocellular carcinoma
Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ...
Nature communications 8, 14421, 2017
CLIPdb: a CLIP-seq database for protein-RNA interactions
YT Yang, C Di, B Hu, M Zhou, Y Liu, N Song, Y Li, J Umetsu, ZJ Lu
BMC genomics 16 (1), 51, 2015
POSTAR2: deciphering the post-transcriptional regulatory logics
Y Zhu, G Xu, YT Yang, Z Xu, X Chen, B Shi, D Xie, ZJ Lu, P Wang
Nucleic acids research 47 (D1), D203-D211, 2019
Standardized annotation of translated open reading frames
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ...
Nature biotechnology 40 (7), 994-999, 2022
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
MA Freeberg, T Han, JJ Moresco, A Kong, Y Yang, ZJ Lu, JR Yates, ...
Genome biology 14 (2), R13, 2013
Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks
B Li, YT Yang, JA Capra, MB Gerstein
PLoS computational biology 16 (11), e1008291, 2020
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins
B Hu, YT Yang, Y Huang, Y Zhu, ZJ Lu
Nucleic acids research 45 (D1), D104-D114, 2016
GENCODE: reference annotation for the human and mouse genomes in 2023
A Frankish, S Carbonell-Sala, M Diekhans, I Jungreis, JE Loveland, ...
Nucleic acids research 51 (D1), D942-D949, 2023
RISE: a database of RNA interactome from sequencing experiments
J Gong, D Shao, K Xu, Z Lu, ZJ Lu, YT Yang, QC Zhang
Nucleic acids research 46 (D1), D194-D201, 2017
Predicting dynamic cellular protein–RNA interactions by deep learning using in vivo RNA structures
L Sun, K Xu, W Huang, YT Yang, P Li, L Tang, T Xiong, QC Zhang
Cell research 31 (5), 495-516, 2021
POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins
W Zhao, S Zhang, Y Zhu, X Xi, P Bao, Z Ma, TH Kapral, S Chen, ...
Nucleic Acids Research 50 (D1), D287-D294, 2022
Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa
Z Tang, Y Wu, Y Yang, YT Yang, Z Wang, J Yuan, Y Yang, C Hua, X Fan, ...
Scientific reports 7, 43166, 2017
Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA–protein binding sites
YE Li, M Xiao, B Shi, YT Yang, D Wang, F Wang, M Marcia, ZJ Lu
Genome biology 18 (1), 169, 2017
Genomic study of polyhydroxyalkanoates producing Aeromonas hydrophila 4AK4
X Gao, J Jian, WJ Li, Y Yang, XW Shen, ZR Sun, Q Wu, GQ Chen
Applied microbiology and biotechnology 97 (20), 9099-9109, 2013
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Drenkow, YT Yang, G Gursoy, T Galeev, B Borsari, ...
Cell 186 (7), 1493-1511, 2023
Cellular transcriptional alterations of peripheral blood in Alzheimer’s disease
L Song, YT Yang, Q Guo, ZIB Consortium, XM Zhao
BMC medicine 20 (1), 266, 2022
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