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Thouis (Ray) Jones
Thouis (Ray) Jones
Other namesThouis R. Jones, Ray Jones, Thouis Jones
Broad Institute
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ...
Genome biology 7 (10), 1-11, 2006
48792006
Example-based super-resolution
WT Freeman, TR Jones, EC Pasztor
IEEE Computer graphics and Applications 22 (2), 56-65, 2002
33812002
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
10442011
Saturated reconstruction of a volume of neocortex
N Kasthuri, KJ Hayworth, DR Berger, RL Schalek, JA Conchello, ...
Cell 162 (3), 648-661, 2015
8592015
Adaptively sampled distance fields: A general representation of shape for computer graphics
SF Frisken, RN Perry, AP Rockwood, TR Jones
Proceedings of the 27th annual conference on Computer graphics and …, 2000
8562000
Non-iterative, feature-preserving mesh smoothing
TR Jones, F Durand, M Desbrun
ACM SIGGRAPH 2003 Papers, 943-949, 2003
7572003
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
TR Jones, IH Kang, DB Wheeler, RA Lindquist, A Papallo, DM Sabatini, ...
BMC bioinformatics 9 (1), 1-16, 2008
5602008
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ...
Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009
4212009
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ...
Nature genetics 51 (12), 1664-1669, 2019
3982019
Voronoi-based segmentation of cells on image manifolds
TR Jones, A Carpenter, P Golland
International Workshop on Computer Vision for Biomedical Image Applications …, 2005
2112005
Genome-wide enhancer maps link risk variants to disease genes
J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ...
Nature 593 (7858), 238-243, 2021
1672021
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment
V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ...
Journal of biomolecular screening 18 (10), 1321-1329, 2013
1522013
Large-scale automatic reconstruction of neuronal processes from electron microscopy images
V Kaynig, A Vazquez-Reina, S Knowles-Barley, M Roberts, TR Jones, ...
Medical image analysis 22 (1), 77-88, 2015
1412015
Pipeline for illumination correction of images for high‐throughput microscopy
S Singh, MA Bray, TR Jones, AE Carpenter
Journal of microscopy 256 (3), 231-236, 2014
912014
Efficient generation of Poisson-disk sampling patterns
TR Jones
Journal of Graphics Tools 11 (2), 27-36, 2006
852006
Normal improvement for point rendering
TR Jones, F Durand, M Zwicker
IEEE Computer Graphics and Applications 24 (4), 53-56, 2004
832004
A siRNA screen identifies RAD21 , EIF3H , CHRAC1 and TANC2 as driver genes within the 8q23, 8q24 …
SF Mahmood, N Gruel, E Chapeaublanc, A Lescure, T Jones, F Reyal, ...
Carcinogenesis 35 (3), 670-682, 2014
772014
Detail-directed hierarchical distance fields
SF Frisken, RN Perry, TR Jones
US Patent 6,396,492, 2002
702002
Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis
AB Castoreno, Y Smurnyy, AD Torres, MS Vokes, TR Jones, ...
Nature chemical biology 6 (6), 457-463, 2010
612010
One-pass super-resolution images
WT Freeman, TR Jones
US Patent 6,766,067, 2004
602004
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