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Lars Juhl Jensen
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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
87002019
STRING v10: protein–protein interaction networks, integrated over the tree of life
D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ...
Nucleic acids research 43 (D1), D447-D452, 2015
84852015
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
55442016
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ...
Nucleic acids research 41 (D1), D808-D815, 2012
42262012
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ...
Nucleic acids research 39 (suppl_1), D561-D568, 2010
35192010
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin, P Aloy, P Grandi, R Krause, M Boesche, M Marzioch, C Rau, ...
Nature 440 (7084), 631-636, 2006
29612006
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
26012009
STRING: known and predicted protein–protein associations, integrated and transferred across organisms
C Von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, ...
Nucleic acids research 33 (suppl_1), D433-D437, 2005
16092005
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
15872016
Mining electronic health records: towards better research applications and clinical care
PB Jensen, LJ Jensen, S Brunak
Nature Reviews Genetics 13 (6), 395-405, 2012
15592012
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ...
Science signaling 3 (104), ra3-ra3, 2010
15372010
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ...
Molecular biology and evolution 34 (8), 2115-2122, 2017
14792017
Protein disorder prediction: implications for structural proteomics
R Linding, LJ Jensen, F Diella, P Bork, TJ Gibson, RB Russell
Structure 11 (11), 1453-1459, 2003
14172003
Drug target identification using side-effect similarity
M Campillos, M Kuhn, AC Gavin, LJ Jensen, P Bork
Science 321 (5886), 263-266, 2008
13112008
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ...
Nucleic acids research 47 (D1), D309-D314, 2019
12652019
Feature-based prediction of non-classical and leaderless protein secretion
JD Bendtsen, LJ Jensen, N Blom, G Von Heijne, S Brunak
Protein Engineering Design and Selection 17 (4), 349-356, 2004
12152004
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic acids research 49 (D1), D605-D612, 2021
11642021
A side effect resource to capture phenotypic effects of drugs
M Kuhn, M Campillos, I Letunic, LJ Jensen, P Bork
Molecular systems biology 6 (1), 343, 2010
9232010
The SIDER database of drugs and side effects
M Kuhn, I Letunic, LJ Jensen, P Bork
Nucleic acids research 44 (D1), D1075-D1079, 2016
8632016
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
D Szklarczyk, A Santos, C Von Mering, LJ Jensen, P Bork, M Kuhn
Nucleic acids research 44 (D1), D380-D384, 2016
8522016
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